jmtyszka/bidskit

Issues

• Blip up/down for multi-echo

  #131 opened 3 months ago by zhengchencai
  0

• Unclear specifications/ lack of examples of "Protocol_Translator.json" file

  #130 opened 5 months ago by ruben-stanford
  0

• Unable to run bidskit - "TypeError: Expected maxsize to be an integer or None"

  #129 opened 5 months ago by ruben-stanford
  3

• Files are overwritten on the second pass

  #128 opened a year ago by gauvinalexandre
  1

• session flag

  #125 opened a year ago by trevorbryanjackson
  0

• Cannot convert Tilted CT Scan

  #123 opened a year ago by gauvinalexandre
  0

• Cannot debug bidskit

  #122 opened a year ago by gauvinalexandre
  0

• Acquisition suffix is duplicated when multiple runs

  #120 opened a year ago by gauvinalexandre
  5

• IntendedFor fields with incorrect slash when running in Windows

  #121 opened a year ago by alexsayal
  0

• Question about data structuring prior to running BIDSKIT

  #119 opened a year ago by ChristineFarrugia
  0

• .bval and .bvec export depends on dwi filename

  #113 opened 2 years ago by davidrs06
  2

• Error when using --no-sessions option and only one subject is converted

  #118 opened 2 years ago by gauvinalexandre
  2

• Second pass error

  #111 opened 2 years ago by hbaagil
  6

• Second pass error : KeyError: 'ScanningSequence'

  #114 opened 2 years ago by elPreeto
  3

• 'SerDesc' key error

  #112 opened 2 years ago by ChristineFarrugia
  4

• Second pass issue

  #117 opened 2 years ago by CatalinaTLl
  1

• Not anonymizing

  #116 opened 2 years ago by CatalinaTLl
  1

• Read-the-Docs page is an empty stub

  #115 opened 2 years ago by dkp
  0

• default readme in BIDS dataset after conversion

  #109 opened 2 years ago by Remi-Gau
  3

• run- label issue with anat-entity.

  #72 opened 2 years ago by JasonProtoMe
  2

• Sanity check for duplicate output filenames

  #76 opened 2 years ago by jmtyszka
  1

• BIDS validation error for fieldmaps after conversion

  #107 opened 2 years ago by zhengchencai
  16

• Uncompressed but gz extension

  #105 opened 2 years ago by jmtyszka
  1

• Illegal characters not stripped in BIDS filename key values with --auto

  #106 opened 2 years ago by jmtyszka
  1

• adding an option to check Protocol_Translator.json

  #95 opened 2 years ago by sarahoh
  0

• Adding flexibility to --bind-fmaps

  #97 opened 2 years ago by sarahoh
  0

• --bind-fmaps not yet set up to work with --no-sessions

  #98 opened 2 years ago by sarahoh
  6

• Issue with 'Intended for' field

  #86 opened 2 years ago by tstoica
  3

• Issues with BOLD SBRefs

  #75 opened 2 years ago by davekahn
  2

• DICOMDIR as input

  #71 opened 2 years ago by alexsayal
  1

• JSON files for magnitude images

  #102 opened 2 years ago by alexsayal
  1

• Documentation for Injecting New Subjects into BIDS Directory

  #100 opened 2 years ago by claytonjschneider
  4

• RPE image IntendedFor correcting DWI: IntendedFor field does not populate

  #89 opened 2 years ago by dkp
  3

• TypeError: can only concatenate list (not "str") to list

  #96 opened 2 years ago by jawaltz
  6

• Compatibility with pybids 0.13.x

  #83 opened 3 years ago by jmtyszka
  0

• Installation told me to ask for help?

  #85 opened 3 years ago by katedamme
  1

• Can we anonymize data while converting?

  #87 opened 3 years ago by zhengchencai
  1

• --bind_fmaps flag is misidentified in --help menu

  #84 opened 3 years ago by davekahn
  1

• Adding key to structural scan filenames to indicate bias correction

  #90 opened 3 years ago by sarahoh
  2

• Implement Support for Scans.tsv

  #92 opened 3 years ago by claytonjschneider
  0

• UnicodeDecodeError: ascii codec can't decode

  #77 opened 3 years ago by hpsaarimaki
  4

• Running bidskit via Docker image fails due to pybids update

  #81 opened 3 years ago by alexenge
  0

• Flag on initial run without sourcedata directory

  #74 opened 3 years ago by davekahn
  1

• Passing custom options to dcm2niix

  #79 opened 3 years ago by alexenge
  1

• Mishandling GRE fieldmaps when individual echo phase images present

  #73 opened 4 years ago by jmtyszka
  1

• More than one sequence with the same name

  #70 opened 5 years ago by alexsayal
  5

• Automatic update of protocol_translator when adding new sourcedata?

  #69 opened 5 years ago by hippocampo
  1

• ImportError: No module named 'bids'

  #64 opened 5 years ago by pn2200
  2

• Docker build . fails in pybids install

  #66 opened 5 years ago by dmd
  2

• clarification on sourcedata requirements

  #67 opened 5 years ago by dmd
  8