Pinned Repositories
CATALYST
Cytometry dATa anALYsis Tools
colorjam
genejam
Gene annotation utility functions, gene aliases, updating gene symbols to the most current official symbol.
jamba
Jam Base Methods for R
jamma
Jam MA-plots, volcano plots, other relevant genomics visualizations
jampack
Jam R package suite for omics data analysis
jamsession
Manage R sessions, objects, project-specific functions
multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments
splicejam
Sashimi plots for RNA-seq data using detected transcripts
venndir
Venn diagrams with directionality (concordance), optional display of items inside the figure, text Venn diagrams
jmw86069's Repositories
jmw86069/splicejam
Sashimi plots for RNA-seq data using detected transcripts
jmw86069/multienrichjam
Analysis and Visualization of Multiple Gene Set Enrichments
jmw86069/venndir
Venn diagrams with directionality (concordance), optional display of items inside the figure, text Venn diagrams
jmw86069/jamba
Jam Base Methods for R
jmw86069/colorjam
jmw86069/genejam
Gene annotation utility functions, gene aliases, updating gene symbols to the most current official symbol.
jmw86069/jampack
Jam R package suite for omics data analysis
jmw86069/jamsession
Manage R sessions, objects, project-specific functions
jmw86069/CATALYST
Cytometry dATa anALYsis Tools
jmw86069/jamma
Jam MA-plots, volcano plots, other relevant genomics visualizations
jmw86069/CLME
Constrained Linear Mixed Effects
jmw86069/coverjam
Genome sequence coverage heatmaps around a central genome feature, such as transcript start site (TSS) or ChIP-seq/ATAC-seq peaks; or across a scaled genome region, such as gene locus regions from transcript start site (TSS) to transcript termination site (TTS).
jmw86069/farrisdata
jmw86069/jamses
Jam SummarizedExperiment Stats (jamses), methods for experiment design, statistical contrast, differential analysis, and visualization of experiment design.
jmw86069/miRNApath
miRNApath: Pathway Enrichment for miRNA Expression Data
jmw86069/myd88-asthma
jmw86069/neurojam
jmw86069/pajam
Protein Atlas tissue and cell atlas data and visualization in R from https://proteinatlas.org
jmw86069/peakdistanceenrichment
ATACseq peak enrichment with sliding scale distance to genes
jmw86069/platjam
Platform data import and manipulation for Jam packages.
jmw86069/rmarkdown
Dynamic Documents for R
jmw86069/salsa
Single-cell Amalgamation by Latent Semantic Analysis (SALSA)
jmw86069/SomaDataIO
The SomaDataIO package loads the SomaLogic, Inc. proprietary data file, called an ADAT file ('*.adat'). It also provides auxiliary functions for extracting and manipulating relevant information from an ADAT, as well as exporting a modified ADAT to file.
jmw86069/svn-color
a wrapper script to colorize SVN output