The goal of multienrichjam is to implement MultiEnrichMap, an extension to EnrichMap and Enrichment Map, originally envisioned and implemented as a Cytoscape plugin by the lab of Dr. Gary Bader
- Bader lab EnrichmentMap, and
- reference: Merico,et al, PLoS One, 2010),
and re-implemented into a larger analysis workflow in R by Dr. Guangchuang Yu in the R packages:
- clusterProfiler, and
- enrichplot.
The MultiEnrichMap extension is a relatively straightforward set of functions to help enable comparison of enrichment results from multiple gene set enrichment tests.
A full online function reference is available via the pkgdown documentation:
Full multienrichjam command reference
Install using the R package remotes and this command:
remotes::install_github("jmw86069/multienrichjam",
dependencies=TRUE);
If you do not have the remotes package, you can install it from CRAN:
install.packages("remotes");
Note that we changed the recommended installation from using devtools
to using remotes because the remotes package is much smaller with
fewer dependencies.