jmw86069/multienrichjam

enrichDF2enrichResult Error: 'undefined columns selected'

Opened this issue · 0 comments

Hello!

I'm currently trying to convert my fGSEA result data.frame into an enrichResult for further processing using the enrichplot package, however, I'm currently getting the following error in response to this input:

 >   fgsea3_1res <-enrichDF2enrichResult(
+     enrichDF = fgsea3_1,
+     pvalueCutoff = 0.05,
+     pAdjustMethod = "BH",
+     keyColname = c("pathway"),
+     pathGenes = "leadingEdge",
+     geneColname = c("leadingEdge"),
+     geneHits = "geneHits",
+     geneRatioColname = c("GeneRatio", "^Ratio"),
+     geneDelim = ",",
+     geneSep = ",",
+     pvalueColname = c("pval", "padj"),
+     descriptionColname = c("pathway"),
+     msigdbGmtT = NULL,
+     verbose = FALSE,
+     )
Error in `[.data.frame`(x, i, j, drop) : undefined columns selected

Any advice is appreciated!