metagenomeFeatures is an R package with annotating 16S metagenomic sequence data using the metagenomeFeatures package (https://github.com/HCBravoLab/metagenomeFeatures.git). A package for the greengenes database version 13.5 was developed, greengenes13.5MgDb(https://github.com/HCBravoLab/greengenes13.5MgDb), for annotating 16S datasets using metagenomeFeatures.
The package is still in development and not available from bioconductor.
To install the development version of the package
- this can be done using devtools
install_github("HCBravoLab/metagenomeFeatures")
See the greengenes13.5MgDb github repository for installation instructions
The package has vignettes demonstrating how to use the greenegenes13.5MgDb package to annotate 16S metagenomic sequence data.