Pinned Repositories
2016
Course material for BIO 260 and CSCI E-107 in Spring 2016
metagenomeFeatures
R package for annotating metagenomic datasets with taxonomic information
metagenomeSeq
Statistical analysis for sparse high-throughput sequencing
courses-HarvardX-IDS-Mod-2
MSD1000
Visualization of the microbiome of children from low-income countries
pandaR
PANDA Algorithm
jnpaulson's Repositories
jnpaulson/courses-HarvardX-IDS-Mod-2
jnpaulson/pandaR
PANDA Algorithm
jnpaulson/Pseudovirome_Docker
10.25.18: ALPHA VERSION is up
jnpaulson/2016
Course material for BIO 260 and CSCI E-107 in Spring 2016
jnpaulson/American-Gut
American Gut open-access data and IPython notebooks
jnpaulson/BiocWorkshops
Workshops for learning Bioconductor
jnpaulson/biom
Development version of the biom package for R
jnpaulson/biomformat
Support for the biom file format in R/Bioconductor, versions 1.x (JSON) as well as 2.x (HDF5)
jnpaulson/biomformat-1
jnpaulson/BLCA
jnpaulson/CountClust
A R package for Grade of Membership model and Visualization of counts data:
jnpaulson/DataScienceFinalProject
BIO260 Final Project
jnpaulson/epivizr
Devel branch of epivizr bioconductor package
jnpaulson/fastqcTheoreticalGC
R package for generating theoretical GC content curves for the FASTQC module
jnpaulson/GameRank
jnpaulson/greengenes13.5MgDb
jnpaulson/Humanzee
Tools for statistical analysis of genomics data
jnpaulson/IntroDataSci
jnpaulson/Krona
Interactively explore metagenomes and more from a web browser.
jnpaulson/metagenomeFeatures
R package for annotating metagenomic datasets with taxonomic information
jnpaulson/metagenomeSeq
Statistical analysis for sparse high-throughput sequencing
jnpaulson/oncoprint_example
jnpaulson/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
jnpaulson/qsmooth
Normalization of high-throughput genomics data
jnpaulson/rafalab.github.io
web page
jnpaulson/rmarkdown
Dynamic Documents for R
jnpaulson/test_repo
This is a test repository for students to learn how to use git and GitHub
jnpaulson/testing
jnpaulson/wastewater-communities
Data analysis for wastewater communities project
jnpaulson/yarn
YARN: Yet Another RNa-seq package