jnpaulson

jnpaulson's Stars

• williazo/microbiomeDASim

  Tools to simulate longitudinal differential abundance for microbiome data

  Language:Jupyter Notebook3

• jnpaulson/pandaR

  PANDA Algorithm

  Language:R22

• keaven/gsDesign

  Group sequential design for clinical trials

  Language:R5014

• keaven/nphsim

  Simulation and power calculations for time-to-event trials

  Language:R187

• jnpaulson/Pseudovirome_Docker

  10.25.18: ALPHA VERSION is up

  Language:Shell1

• Bioconductor/BiocWorkshops

  :warning: 2018 :warning: Bioconductor Workshops

  Language:TeX7453

• dschlauch/stego

  Implementation of the stego algorithm - Similarity Test for Estimating Genetic Outliers

  Language:R21

• dschlauch/MONSTER

  Modeling Network State Transitions from Expression and Regulatory data (MONSTER)

  Language:R31

• QuackenbushLab/yarn

  YARN: Robust Multi-Tissue RNA-Seq Preprocessing and Normalization

  Language:R132

• yechengxi/LightNet

  Efficient, transparent deep learning in hundreds of lines of code.

  Language:MATLAB270116

• ryanfb/dzi-dl

  Deep Zoom Image Downloader

  Language:Ruby184

• HCBravoLab/qsmooth

  Normalization of high-throughput genomics data

  Language:R1

• jplatig/condor

  COmplex Network Description Of Regulators, an R package for bipartite network analysis

  Language:R116

• kokrah/qsmooth

  Normalization of high-throughput genomics data

  Language:R23

• HCBravoLab/MicrobiomeSC

  MicrobiomeSC is a metagenomics analysis suite using a secure multi-party computation technique known as garbled circuits.

  Language:Java21

• renozao/NMF

  NMF: A Flexible R package for Nonnegative Matrix Factorization

  Language:R13941

• epiviz/epiviz

  EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding of correlations between various genome features.

  Language:JavaScript6812

• epiviz/epivizr

  Devel branch of epivizr bioconductor package

  Language:R95

• HCBravoLab/metagenomeFeatures

  R package for annotating metagenomic datasets with taxonomic information

  Language:R105

• LeeMendelowitz/AirportViz

  Visualization of the Washington Post Airport Survey

  Language:HTML3

• alk224/akutils-v1.1.1

  Mostly useful scripts and files for processing MiSeq amplicon data

  Language:Shell167

• epiviz/metavizr

  R package to manage and visualize metagenomic datasets with metaviz

  Language:R7

• jhsiao999/flowMap

  Language:R6

• jnpaulson/MSD1000

  Visualization of the microbiome of children from low-income countries

  Language:R11

• HenrikBengtsson/matrixStats

  R package: Methods that Apply to Rows and Columns of Matrices (and to Vectors)

  Language:R20634

• gcyuan/SCUBA

  Language:MATLAB119

• kokrah/HTShape

  Shape analysis of high-throughput data

  Language:R191

• NCBI-Hackathons/hackathon_v001_metagenomics

  Metagenomics Pipeline Repository for January, 2015 NCBI/ADDS Hackathon at NIH

  Language:Shell114

• joey711/shiny-phyloseq

  An interactive web application for demonstrating and using phyloseq.

  Language:HTML6045

• LeeMendelowitz/ConfigFiles

  My configuration files

  Language:Shell51