Pinned Repositories
alignment-server
Simple server to translate input DNA to a peptide and search genomes for a parent protein.
autopick-bc
Image classification module for protein detection in cryo-EM data.
conformation-inspector
Python script to visualize statistics on the conformational composition of protein oligomers in cryo-EM data.
cryobase
React/Electron desktop app for managing cryo-electron microscopy data on AWS S3.
ctf-grapher
Graphical tool to visualize the contrast transfer function (CTF) of an electron microscope.
dllogger
A logging tool for deep learning.
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
flash-attention
Fast and memory-efficient exact attention
genie
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
joelmeyerson's Repositories
joelmeyerson/alignment-server
Simple server to translate input DNA to a peptide and search genomes for a parent protein.
joelmeyerson/autopick-bc
Image classification module for protein detection in cryo-EM data.
joelmeyerson/conformation-inspector
Python script to visualize statistics on the conformational composition of protein oligomers in cryo-EM data.
joelmeyerson/cryobase
React/Electron desktop app for managing cryo-electron microscopy data on AWS S3.
joelmeyerson/ctf-grapher
Graphical tool to visualize the contrast transfer function (CTF) of an electron microscope.
joelmeyerson/dllogger
A logging tool for deep learning.
joelmeyerson/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
joelmeyerson/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
joelmeyerson/flash-attention
Fast and memory-efficient exact attention
joelmeyerson/genie
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
joelmeyerson/hole-cmm
Python script to convert HOLE program output to Chimera and ChimeraX marker files.
joelmeyerson/quick-montage
Generate a montage of a cryo-EM image with its associated power spectrum and CTF estimate.
joelmeyerson/LigandMPNN
joelmeyerson/openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
joelmeyerson/plmc
Inference of couplings in proteins and RNAs from sequence variation
joelmeyerson/ProteinMPNN
Code for the ProteinMPNN paper
joelmeyerson/RoseTTAFold-All-Atom