Pinned Repositories
CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
GATK-QScripts
GATK QScripts used in our illumina variant calling pipeline.
gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
poretools
a toolkit for working with Oxford nanopore data
shinyCircos
an R/shiny application for creation of Circos plot interactively
simem
Code for the siMEM algorithm for predicting context-specific essentiality from functional (shRNA, CRISPR/Cas9) screens.
tutorials
Learning on the fly
SomaDataIO
The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
john-alexander's Repositories
john-alexander/CalliNGS-NF
GATK RNA-Seq Variant Calling in Nextflow
john-alexander/GATK-QScripts
GATK QScripts used in our illumina variant calling pipeline.
john-alexander/gatk4-germline-snps-indels
Workflows for germline short variant discovery with GATK4
john-alexander/poretools
a toolkit for working with Oxford nanopore data
john-alexander/shinyCircos
an R/shiny application for creation of Circos plot interactively
john-alexander/simem
Code for the siMEM algorithm for predicting context-specific essentiality from functional (shRNA, CRISPR/Cas9) screens.
john-alexander/tutorials
Learning on the fly