SomaLogic/SomaDataIO
The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
RNOASSERTION
Pinned issues
Issues
- 3
Analyte metadata stripped with read_adat() due to warning messages returned as non-English statements
#122 opened by m-gall - 2
Are the statistical analysis vignettes referenced in the README actually included in the SomaDataIO package?
#123 opened by nmcnulty - 1
Fix undeclared `stringr` reference in `xrefs`
#106 opened by stufield - 0
- 0
- 0
Increase package test coverage
#112 opened by stufield - 1
- 1
- 0
- 0
- 0
- 0
`collapseAdats()` does not merge the `Col.Meta`
#113 opened by stufield - 0
- 0
Fix `master` -> `main` reference in `DESCRIPTION`
#107 opened by stufield - 0
Release SomaDataIO 6.1.0
#79 opened by stufield - 0
Create release checklist for CRAN releases
#103 opened by stufield - 0
Create Lifting (bridging) vignette
#77 opened by stufield - 0
- 0
Update NEWS.md file prior to 6.1.0 release
#75 opened by stufield - 0
- 0
Convert `getAdatVersion()` to S3 method
#92 opened by stufield - 0
- 0
Add CCC lifting accessor function
#88 opened by stufield - 0
Add lifting code for the 11k SomaScan menu
#78 opened by stufield - 0
Internalize lifting scale factors
#81 opened by stufield - 0
- 0
- 0
Add function `getSomaScanVersion()`
#83 opened by stufield - 4
- 12
Error when using dplyr::group_by()
#66 opened by laurapyle - 0
Bump year to 2024
#68 opened by stufield - 0
Tweak to S3 `tidyr::separate.soma_adat()`
#72 opened by stufield - 0
- 0
Expose functions previously in `R/sysdata.rda`
#59 opened by stufield - 0
- 2
SomaLogic data to PRIDE Archive
#56 opened by ypriverol - 0
- 0
Create vignette for ANOVA analysis of SomaScan
#47 opened by stufield - 2
- 0
Create vignette on how to use the CLI merge tool
#45 opened by stufield - 2
Volcano plot
#30 opened by MoemenEltobgy - 3
Summary and relative abundance
#28 opened by MoemenEltobgy - 2
Flagged and Normal distribution
#29 opened by MoemenEltobgy - 0
- 0
Release SomaDataIO 6.0.0 -> CRAN
#33 opened by stufield - 2
Loading an adat
#27 opened by MoemenEltobgy - 0
- 1
- 0
Add Clinical Data Merging CLI tool
#25 opened by stufield - 0