stufield
Data scientist and software engineer with 12+ years experience implementing machine learning in biomarker discovery and the proteomics/life sciences spaces.
SomaLogic Inc.Fort Collins, Colorado
Pinned Repositories
SomaDataIO
The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
devel
This "package" is the development package. It contains a loose testing ground of functionality without a home
git-STAA-577
Slides, code, cheat sheets, and RStudio lab notebooks for "Applied Machine Learning" course for Spring 2019
gitr
A light-weight, dependency-free, API to access system-level git commands from within R
grapevine
The Grapes of Wrath. A simple set of useful, unique, and non-standard binary operators.
stutils
Small suite of useful functions, subroutines, and data objects for data set manipulation and analysis in R.
TestPkg
Just a test package to debug devtools and builds
stufield's Repositories
stufield/gitr
A light-weight, dependency-free, API to access system-level git commands from within R
stufield/devel
This "package" is the development package. It contains a loose testing ground of functionality without a home
stufield/grapevine
The Grapes of Wrath. A simple set of useful, unique, and non-standard binary operators.
stufield/stutils
Small suite of useful functions, subroutines, and data objects for data set manipulation and analysis in R.
stufield/TestPkg
Just a test package to debug devtools and builds
stufield/code-works
This is simply a script repository, mostly a dumping ground for R scripts that don't have a proper home
stufield/csu-career-day-2018
Slides for presentation on the CSU careers in Life Sciences Day 2018
stufield/git-hooks
A testing ground for Git hooks ... what they do and when they're triggered
stufield/hex-images
A repository for typical PNG and/or SVG hex stickers primarily of the tidyverse
stufield/hex-stickers
Creating and manipulating hex stickers for R projects and packages. I stole this from somewhere but can't remember where
stufield/mehan-scripts
Crude greedy backup of original R scripts passed down from Mike Mehan
stufield/methyl-seq-analysis
A quick directory structure and setup for the Methyl Seq Analysis at ARBL
stufield/mosquitoSNP
Summary scripts of the African mosquito SNP data evaluating population genetic resistance to pesticides
stufield/packages-report
A repo from the WFT-workshop at RStudio Conf 2019 with Jenny Bryan and Jim Hester
stufield/power
A rudimentary power analysis tool geared towards 2-group comparisons
stufield/recipes
Pipeable steps for feature engineering and data preprocessing to prepare for modeling
stufield/remotes
Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs
stufield/reprex-collection
A collection of *.R source code and *.html files of useful R tricks coded a reproducible examples via reprex
stufield/rstudio-conf-2018
Workshop materials from the Rstudio::conf2018 Machine Learning with Max Kuhn
stufield/slide-template
GitHub Repository for Rmarkdown Xaringan Slideshow Presentations
stufield/SomaDataIO
The SomaDataIO package loads and exports 'SomaScan' data via the 'SomaLogic Operating Co., Inc.' proprietary data file, called an ADAT ('*.adat'). The package also exports auxiliary functions for manipulating, wrangling, and extracting relevant information from an ADAT object once in memory.
stufield/SomaPlotr
A highly specialized suite of standardized plotting routines based on the "Grammar of Graphics" framework of mapping variables to aesthetics used in 'ggplot2'. Graphics types are biased towards visualizing SomaScan (proteomic) data.
stufield/SomaScan.db
Bioconductor package containing annotations for SomaLogic's SomaScan assay
stufield/stufield
Personal GitHub profile repository
stufield/system-config
A repository of system level files, 'dot' files, run command, and configuration files
stufield/tech-interview-coding
Coding exercise for a technical interview for basic R development
stufield/tech-notes
Repository containing technical notes on various statistical and machine learning, computer science, and related topics
stufield/tidy-tools-2018
The tity-tools workshop with Hadley Wickham; this is an "unofficial" fork of the original repository used for the course
stufield/usethis
Set up commonly used 📦 components
stufield/White-Pine-Blister-Rust
Full set of functions, subroutines, and data objects for the high-elevation white pine blister rust (WPBR) project, a collaboration between the Colorado State University Dept. of Biology/Mathematics and the USDA Forest Service