Pinned Repositories
afp_app
afp_utils
bias-in-ai_workshop
datman
scripts for managing xnat, QC, and data analysis
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
mriqc_shiny
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
SDC-BIDS-dMRI
SDC-BIDS-IntroMRI
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
josephmje's Repositories
josephmje/bias-in-ai_workshop
josephmje/SDC-BIDS-dMRI
josephmje/afp_app
josephmje/afp_utils
josephmje/air-tigrs
Orchestration tools for TIGRLab's data management infrastructure
josephmje/aroma
ICA-AROMA, as a Python package. A work in progress.
josephmje/datman
scripts for managing xnat, QC, and data analysis
josephmje/dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
josephmje/niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
josephmje/SDC-BIDS-IntroMRI
josephmje/sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
josephmje/asl-preprocessing
josephmje/aslprep
josephmje/book
Sources for the DataLad handbook
josephmje/dashboard
tigrlab dashboard development
josephmje/Dcm2Bids
Reorganising NIfTI files from dcm2niix into the Brain Imaging Data Structure
josephmje/dipy
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
josephmje/dmri-microstructure
josephmje/dmri_analyses
Slicer Tractography pipeline for TIGRLab.
josephmje/EddyMotionCorrection
Open-source eddy-current and head-motion correction for dMRI.
josephmje/excel-to-python
Excel to Python Course Material
josephmje/fiberfox-wrapper
Docker/Singularity wrapper for MITK Diffusion FiberFox
josephmje/forecasting-with-dl
Overview of State-of-the-art Deep Learning Based Methods for Time Series Forecasting
josephmje/llm-zoomcamp
LLM Zoomcamp - a free online course about building a Q&A system
josephmje/mlops-zoomcamp
Free MLOps course from DataTalks.Club
josephmje/mlops_course
MLOPS course - 3 week intro
josephmje/mybinder.org-deploy
Deployment config files for mybinder.org
josephmje/SDC-BIDS-fMRI
http://imaging-genetics.camh.ca/2019-05-27-fmri-python/
josephmje/SDC-BIDS-sMRI
Structural Neuroimaging Analysis in Python
josephmje/styles
Styles for The Carpentries lessons. Documentation at http://carpentries.github.io/lesson-example/.