Pinned Repositories
afp_app
afp_utils
bias-in-ai_workshop
datman
scripts for managing xnat, QC, and data analysis
dmriprep
dMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse dMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
mriqc_shiny
niworkflows
Common workflows for MRI (anatomical, functional, diffusion, etc)
SDC-BIDS-dMRI
SDC-BIDS-IntroMRI
sdcflows
Susceptibility Distortion Correction (SDC) workflows for EPI MR schemes
josephmje's Repositories
josephmje/mriqc_shiny
josephmje/blog
josephmje/ciftify
The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets
josephmje/dicom-archive-tools
a set of tools to deal with DICOMs
josephmje/fitlins
Fit Linear Models to BIDS Datasets
josephmje/heudiconv
A flexible DICOM converter for organizing brain imaging data into structured directory layouts
josephmje/Loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
josephmje/Loris-MRI
The set of scripts that preprocess and insert MRI data into the database.
josephmje/qcmon
qćmon: gotta check 'em all
josephmje/spred-upload-tools
Scripts used to de-identify human brain imaging data and batch upload to SPReD