joshua-gould

Pinned Repositories

morpheus.js
JavaScript matrix visualization and analysis
Language:JavaScript62 9 2221
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Language:Python00
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
Language:Python0 0 00
bfio
Interface to the Bioformats Java library
Language:Python0 0 00
canvas2pdf
Export your HTML canvas to PDF
Language:JavaScript207 6 2436
cellphonedb-chord
Draw a chord diagram from cellphonedb output
Language:JavaScript2 1 00
centrosome
An open source image processing library
Language:Python00
OpenSeadragonCanvasOverlayHd
An OpenSeadragon plugin that adds canvas overlay capability in HD and supports multi-images.
Language:JavaScript13 2 22
scatter-gl
Interactive 3D / 2D webgl-accelerated scatter plot point renderer
Language:TypeScript1 1 00

joshua-gould's Repositories

joshua-gould/canvas2pdf
Export your HTML canvas to PDF
Language:JavaScript207 6 2436
joshua-gould/OpenSeadragonCanvasOverlayHd
An OpenSeadragon plugin that adds canvas overlay capability in HD and supports multi-images.
Language:JavaScript13 2 22
joshua-gould/cellphonedb-chord
Draw a chord diagram from cellphonedb output
Language:JavaScript2 1 00
joshua-gould/scatter-gl
Interactive 3D / 2D webgl-accelerated scatter plot point renderer
Language:TypeScript1 1 00
joshua-gould/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
Language:Python00
joshua-gould/ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
Language:Python0 0 00
joshua-gould/bfio
Interface to the Bioformats Java library
Language:Python0 0 00
joshua-gould/centrosome
An open source image processing library
Language:Python00
joshua-gould/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
Language:Java0 1 00
joshua-gould/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
Language:Python0 1 00
joshua-gould/OpticalPooledScreens
Code and examples for optical pooled screens (updated protocol).
Language:Python0 1 00
joshua-gould/starfish
starfish: unified pipelines for image-based transcriptomics
Language:Python0 1 00
joshua-gould/dask
Parallel computing with task scheduling
joshua-gould/dask_relabeling
A relabeling tool for tiled segmentation with Dask
Language:Python
joshua-gould/imreg_dft
Image registration using discrete Fourier transform.
Language:Python0 0
joshua-gould/napari
napari: a fast, interactive, multi-dimensional image viewer for python
Language:Python0 0
joshua-gould/probreg
Python package for point cloud registration using probabilistic model (Coherent Point Drift, GMMReg, SVR, GMMTree, FilterReg, Bayesian CPD)
Language:Python0 0
joshua-gould/scanpy
Single-cell analysis in Python. Scales to >1M cells.
Language:Python0 0
joshua-gould/spatialdata
An open and interoperable data framework for spatial omics data
joshua-gould/vitessce
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
joshua-gould/winstanley
An IntelliJ Plug-in for WDL
Language:Scala0 0