Pinned Repositories
morpheus.js
JavaScript matrix visualization and analysis
aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
bioio
Image reading, metadata management, and image writing for Microscopy images in Python
canvas2pdf
Export your HTML canvas to PDF
cellphonedb-chord
Draw a chord diagram from cellphonedb output
OpenSeadragonCanvasOverlayHd
An OpenSeadragon plugin that adds canvas overlay capability in HD and supports multi-images.
scatter-gl
Interactive 3D / 2D webgl-accelerated scatter plot point renderer
joshua-gould's Repositories
joshua-gould/canvas2pdf
Export your HTML canvas to PDF
joshua-gould/OpenSeadragonCanvasOverlayHd
An OpenSeadragon plugin that adds canvas overlay capability in HD and supports multi-images.
joshua-gould/cellphonedb-chord
Draw a chord diagram from cellphonedb output
joshua-gould/scatter-gl
Interactive 3D / 2D webgl-accelerated scatter plot point renderer
joshua-gould/aicsimageio
Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
joshua-gould/aicspylibczi
Python module utilizing libCZI for reading Zeiss CZI files.
joshua-gould/ashlar
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
joshua-gould/bioio
Image reading, metadata management, and image writing for Microscopy images in Python
joshua-gould/bioio-ome-zarr
A BioIO reader plugin for reading Zarr files in the OME format.
joshua-gould/centrosome
An open source image processing library
joshua-gould/dask
Parallel computing with task scheduling
joshua-gould/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
joshua-gould/ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
joshua-gould/OpticalPooledScreens
Code and examples for optical pooled screens (updated protocol).
joshua-gould/starfish
starfish: unified pipelines for image-based transcriptomics
joshua-gould/bioio-czi
A BioIO reader plugin for reading CZI files.
joshua-gould/dask-expr
joshua-gould/dask-image
Distributed image processing
joshua-gould/dask_relabeling
A relabeling tool for tiled segmentation with Dask
joshua-gould/imreg_dft
Image registration using discrete Fourier transform.
joshua-gould/miniwdl-omics-run
WDL launcher for AWS HealthOmics
joshua-gould/multiview-stitcher
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
joshua-gould/napari
napari: a fast, interactive, multi-dimensional image viewer for python
joshua-gould/probreg
Python package for point cloud registration using probabilistic model (Coherent Point Drift, GMMReg, SVR, GMMTree, FilterReg, Bayesian CPD)
joshua-gould/winstanley
An IntelliJ Plug-in for WDL
joshua-gould/xarray
N-D labeled arrays and datasets in Python