josiegleeson
Postdoc in the Clark Lab at the University of Melbourne using long-read nanopore sequencing to investigate human brain isoforms.
The University of MelbourneMelbourne
Pinned Repositories
NanoCount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
annotate-m6anet-output
BamSlam
Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
compare-modification-rates-at-shared-sites
Uses the results from m6anet to test for differences in the m6A levels within multiple transcript isoforms that encode the same genomic position.
direct-rna-5Y-study-2022
This repository contains scripts used in the dRNA sequencing with Nanopore thesis.
GenomeProt_dev
sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
SimReadTruncs
Simulate read truncations observed in ONT direct RNA and cDNA data
SQANTI3-dockerfile
Badread
a long read simulator that can imitate many types of read problems
josiegleeson's Repositories
josiegleeson/BamSlam
Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files
josiegleeson/direct-rna-5Y-study-2022
This repository contains scripts used in the dRNA sequencing with Nanopore thesis.
josiegleeson/SimReadTruncs
Simulate read truncations observed in ONT direct RNA and cDNA data
josiegleeson/annotate-m6anet-output
josiegleeson/compare-modification-rates-at-shared-sites
Uses the results from m6anet to test for differences in the m6A levels within multiple transcript isoforms that encode the same genomic position.
josiegleeson/GenomeProt_dev
josiegleeson/sg-nex-data
Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project
josiegleeson/SQANTI3-dockerfile