rrwick/Badread

Issues

• Simulate direct RNA transcript data (5' read truncation)

  #36 opened 2 months ago by josiegleeson
  3

• Confusion about total base sizes

  #35 opened 3 months ago by kubracelikbas
  2

• KeyError when running 'badread error_model'

  #33 opened 5 months ago by stcoh
  2

• Are complementary sequences simulated.

  #23 opened a year ago by RDorney
  2

• Positions in the read header line are incorrect for all sequences from - strand.

  #34 opened 5 months ago by shenwei356
  2

• How to handle PacBio simulated reads before mapping

  #31 opened 7 months ago by RDorney
  1

• Do q-scores adhere to phred33?

  #30 opened 8 months ago by JonathanAbrahams1337
  1

• Error model for PacBio Kinnex RNA library

  #29 opened 9 months ago by kokyriakidis
  2

• --qualitity does not seem to take an absolute value

  #28 opened 9 months ago by hasindu2008
  5

• Error models and te technology of real reads

  #27 opened 9 months ago by jyw-atgithub
  2

• Explanation of output

  #26 opened 10 months ago by junhaiqi
  1

• Error while processing alignments

  #25 opened a year ago by alihamraoui
  1

• How to simulate Pacbio hifi reads?

  #24 opened a year ago by JianjunJin
  2

• ModuleNotFoundError: No module named 'edlib'

  #15 opened 4 years ago by snayfach
  1

• Multi-threading

  #7 opened 5 years ago by baraaorabi
  4

• Documentation on post processing of simulated sequences

  #22 opened 2 years ago by ahfitzpa
  1

• Incorrect read length distribution produced when read length close to reference length

  #17 opened 2 years ago by amandawarr
  1

• badread error_model is not outputting anything and not giving an error

  #19 opened 2 years ago by evantroendle
  1

• How to find the co ordinates of long reads with respect to the reference genome from which the reads were simulated

  #18 opened 2 years ago by Oieswarya
  1

• Fragment length > max(len(contig))?

  #5 opened 2 years ago by baraaorabi
  1

• High Memory consumption causes computer to freeze

  #21 opened 2 years ago by RDorney
  0

• Question about --glitches

  #16 opened 3 years ago by riccardo-aiese
  0

• pi3 install ./Badread fails with "'ascii' codec can't decode byte 0xe2" error

  #9 opened 4 years ago by rcedgar
  1

• Organelle genome simulation

  #14 opened 4 years ago by huilin-al
  0

• read location

  #13 opened 4 years ago by chklopp
  1

• Can we give error percentage while simualting Oxford nanopore long reads

  #12 opened 4 years ago by Oieswarya
  0

• What if we could generate two datasets with same reads, one with good quality and one with bad quality?

  #11 opened 5 years ago by ginnamon
  0

• Error in minus strand

  #10 opened 5 years ago by asdcid
  1

• Can chimeras be formed without adapter sequences?

  #8 opened 5 years ago by Jonathan-Abrahams
  0

• JoSS Review Notes

  #2 opened 6 years ago by betteridiot
  1

• edlib requirement caused install hiccup

  #3 opened 6 years ago by betteridiot
  2

• Change install documentation

  #4 opened 6 years ago by betteridiot
  3

• Address Community guidelines

  #1 opened 6 years ago by betteridiot
  2