jrcasey
Postdoctoral Fellow - Microbial Oceanography, Systems Biology, marine microbial metabolism and physiology
Massachusetts Institute of Technology
Pinned Repositories
bayesian_cbiomes
notebooks and files for the Bayesian CBIOMES workshop
Bioremdiation
Collection for Bioremediation LDRD-LW proposal
evolutionABM
Agent Based Modeling of mutation with community dFBA
jrcasey.github.io
My website
mse
Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included
mse_AMT
Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included.
mse_AMT_deprecated
MSE adapted for AMT cruise
NutrientUptake
Accompanying code to Casey and Follows, 2020. A flexible and easy-to-use model of microbial acclimation to nutrient availability.
PanGEM
Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction
PheArrMe
Phenotype array guided GEM gap-filling
jrcasey's Repositories
jrcasey/PanGEM
Pangenome-scale metabolic network reconstruction, analysis, and strain-model extraction
jrcasey/mse_AMT
Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included.
jrcasey/NutrientUptake
Accompanying code to Casey and Follows, 2020. A flexible and easy-to-use model of microbial acclimation to nutrient availability.
jrcasey/mse_AMT_deprecated
MSE adapted for AMT cruise
jrcasey/PheArrMe
Phenotype array guided GEM gap-filling
jrcasey/bayesian_cbiomes
notebooks and files for the Bayesian CBIOMES workshop
jrcasey/Bioremdiation
Collection for Bioremediation LDRD-LW proposal
jrcasey/evolutionABM
Agent Based Modeling of mutation with community dFBA
jrcasey/jrcasey.github.io
My website
jrcasey/mse
Microbial Simulation Environment - A toolbox for the simulation of genome-scale metabolic network reconstructions in the marine environment. A case study with the AMT-13 cruise transect is included
jrcasey/mse_EqPac
MSE toolbox applied to a 1992 EqPac transect of the equatorial Pacific along the 140W line.
jrcasey/OldSite
Homepage
jrcasey/kickstart.nvim
A launch point for your personal nvim configuration