/evolutionABM

Agent Based Modeling of mutation with community dFBA

MIT LicenseMIT

Install

  • create conda environment conda create -n evolutionABM python=3.8
  • numpy, pandas, matplotlib, seaborn conda install numpy pandas matplotlib seaborn
  • cobrapy pip install cobra
  • CPLEX python /Applications/CPLEX_Studio2211/python/setup.py install
  • Mesa pip install mesa
  • Export conda env conda env export > environment.yml