jrcunning
Coral reef conservation research @SheddAquarium. Bioinformatics, stats, modeling, data viz, open science, Rstats. Formerly @CoralReefFuturesLab, @GatesCoralLab
@SheddAquariumChicago, IL
Pinned Repositories
CBASS_FL_Acer
Data for: Census of heat tolerance among Florida’s threatened staghorn corals finds resilient individuals throughout existing nursery populations
CBASS_methods
coRal
R package for dynamic bioenergetic modeling of coral-Symbiodinium symbioses
coRal-analysis
Code repository for "A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state"
mcav_shuffle
Data for: Thermotolerant coral symbionts modulate heat stress-responsive genes in their hosts
pdam-genome
pom-dredge
Analysis of dredging impacts to coral reefs at the Port of Miami
STJ2012
Data for: Using high-throughput sequencing of ITS2 to describe Symbiodinium metacommunities in St. John, U.S. Virgin Islands
SymITS2
Bioinformatic toolkit for Symbiodinium ITS2 sequence data
symshuff-3c
Data for: Symbiont shuffling linked to differential photochemical dynamics of Symbiodinium in three Caribbean reef corals
jrcunning's Repositories
jrcunning/coRal
R package for dynamic bioenergetic modeling of coral-Symbiodinium symbioses
jrcunning/mcav_shuffle
Data for: Thermotolerant coral symbionts modulate heat stress-responsive genes in their hosts
jrcunning/SymITS2
Bioinformatic toolkit for Symbiodinium ITS2 sequence data
jrcunning/coRal-analysis
Code repository for "A dynamic bioenergetic model for coral-Symbiodinium symbioses and coral bleaching as an alternate stable state"
jrcunning/pdam-genome
jrcunning/CBASS_methods
jrcunning/pom-dredge
Analysis of dredging impacts to coral reefs at the Port of Miami
jrcunning/CBASS_FL_Acer
Data for: Census of heat tolerance among Florida’s threatened staghorn corals finds resilient individuals throughout existing nursery populations
jrcunning/qpcr-analysis
Analyzing qPCR data
jrcunning/steponeR
R package for importing qPCR data from StepOne™ Software
jrcunning/acerv-gwas
jrcunning/bsrte
Bahamas reciprocal transplant experiment with Acropora cervicornis
jrcunning/CBASS_KJS_NSU
CBASS runs on KJS' NSU nursery corals on CRII, Aug. 2020
jrcunning/DRM2024
jrcunning/DRTO_Acer
jrcunning/FL_hist_ITS2
jrcunning/fluconazole
jrcunning/HC_metrics
Haerther Center conservation research quarterly metrics
jrcunning/metacomm
jrcunning/mwk-wq
Water quality data analysis and reporting
jrcunning/pulchritude
jrcunning/research_metrics
jrcunning/shedd_coral_db
jrcunning/SheddCoralSym
Symbiodiniaceae in Shedd Aquarium's corals
jrcunning/STJ2015
jrcunning/STJ2017
jrcunning/STJ_ITS2
jrcunning/SymPortal_framework
Welcome to the SymPortal GitHub repository. SymPortal is an analytical tool used to identify Symbiodinium spp. taxa using Illumina rDNA ITS2 amplicon NGS data.
jrcunning/TPCBASS
jrcunning/twosyms
coRal simulations with two symbionts