jrhawley
Computational Biologist at @Roche. PhD from the @LupienLab at the University of Toronto.
Toronto, Ontario
Pinned Repositories
bio-jtools-rs
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data, written entirely in Rust
cb
Command line clipboard utility
docker-pyrosetta
Docker image for PyRosetta
hb
A CLI/TUI for Homebank
pad-path
Intuitively modify your `$PATH`
quill
Query bills and accounts to check on your financial statements.
recipes
Recipe book
Terminal
Custom terminal setup for Linux and Mac
3d-reorganization-prostate-cancer
Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
Zhou_FOXA1_ncomm_2020
Plots, code, and analyses for Zhou et al, Nature Communications, 2020
jrhawley's Repositories
jrhawley/higlass-python
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
jrhawley/manim
Animation engine for explanatory math videos
jrhawley/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
jrhawley/TADsplimer
TADsplimer
jrhawley/clodius
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
jrhawley/negspy
Python NGS Repository
jrhawley/localtadsim
jrhawley/bio-jtools
Various bioinformatics tools in one package
jrhawley/seneviratne-xu_cell-stem-cell_2019
ATAC-seq data analysis for Seneviratne, Xu, et al., Cell Stem Cell, 2019
jrhawley/hic_breakfinder
jrhawley/genomic-interval-similarity
Thoughts on comparing genomic intervals across a set of samples
jrhawley/pyinterval
PyInterval — Interval arithmetic in Python
jrhawley/pycrlibm
Python bindings for CRlibm
jrhawley/python-conda-package-template
Template for building Python packages that can be easily bundled as Anaconda packages, too
jrhawley/interval
Python interval and interval set implementation. This is my copy of the `interval` package on PyPI https://pypi.org/project/interval/
jrhawley/usra-iqc
Quantum communication complexity project for Emerson Lab at the Institute for Quantum Computing
jrhawley/cb
Command line clipboard utility
jrhawley/r-color-palettes
Comprehensive list of color palettes available in r ❤️🧡💛💚💙💜
jrhawley/higlass
Fast large scale matrix visualization for the web.
jrhawley/jrhstyler
A Tidy R Code Style
jrhawley/HiCPlus-PC
jrhawley/dryhic
jrhawley/HiCUP
Fork of Hi-C User Pipeline (HiCUP) https://www.bioinformatics.babraham.ac.uk/projects/hicup/
jrhawley/dmrseq
R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
jrhawley/bioconda-recipes
Conda recipes for the bioconda channel.
jrhawley/zsh-syntax-highlighting
Fish shell like syntax highlighting for Zsh.
jrhawley/ggupset
Combination matrix axis for 'ggplot2' to create 'UpSet' plots
jrhawley/bctpy
brain connectivity toolbox for python
jrhawley/cLoops
Accurate and flexible loops calling tool for 3D genomic data based on un-supervised clustering and permuted local background.
jrhawley/docker-pyrosetta
Docker image for PyRosetta