jrhawley
Computational Biologist at @Roche. PhD from the @LupienLab at the University of Toronto.
Toronto, Ontario
Pinned Repositories
bio-jtools-rs
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data, written entirely in Rust
cb
Command line clipboard utility
docker-pyrosetta
Docker image for PyRosetta
hb
A CLI/TUI for Homebank
pad-path
Intuitively modify your `$PATH`
quill
Query bills and accounts to check on your financial statements.
recipes
Recipe book
Terminal
Custom terminal setup for Linux and Mac
3d-reorganization-prostate-cancer
Code, analysis, and results for Hawley, Zhou, et al., Cancer Research, 2021.
Zhou_FOXA1_ncomm_2020
Plots, code, and analyses for Zhou et al, Nature Communications, 2020
jrhawley's Repositories
jrhawley/pad-path
Intuitively modify your `$PATH`
jrhawley/bio-jtools-rs
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data, written entirely in Rust
jrhawley/quill
Query bills and accounts to check on your financial statements.
jrhawley/Terminal
Custom terminal setup for Linux and Mac
jrhawley/hb
A CLI/TUI for Homebank
jrhawley/research-template-project
Template repo for scientific research projects
jrhawley/phd-thesis
PhD thesis
jrhawley/recipes
Recipe book
jrhawley/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
jrhawley/conda-recipes
Anaconda recipes for various packages
jrhawley/gitignore
A collection of useful .gitignore templates
jrhawley/jrhawley
jrhawley/link-validator
A CLI tool to find all links in Markdown files and check that they exist.
jrhawley/linRemoteCollaborationFuses2023
Inspection of Lin, Frey, and Wu. "Remote collaboration fuses fewer breakthrough ideas". Nature, 2023.
jrhawley/linux-surface
Linux Kernel for Surface Devices
jrhawley/Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
jrhawley/n1diff
Differential gene expression with James-Stein estimators
jrhawley/NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
jrhawley/NixOS-Users-Against-MIC-Sponsorship.github.io
jrhawley/nixpkgs
Nix Packages collection
jrhawley/orgize
A Rust library for parsing orgmode files.
jrhawley/pal-singh-veyajaru_cell-stem-cell_2020
ATAC-seq data analysis for Pal Singh, Jeyaraju, et al., Cell Stem Cell, 2020
jrhawley/pdftools
small collection of python scripts for pdf manipulation
jrhawley/scoop-bucket
Personal bucket for Scoop apps
jrhawley/scoop-main
📦 The default bucket for Scoop.
jrhawley/tinymd
Markdown parser written in Rust
jrhawley/wally
The Flash(ing tool)
jrhawley/wally-win
The Flash(ing tool)
jrhawley/webmention.io
Easily enable webmentions and pingbacks on any web page
jrhawley/webmention.js
Client-side library for rendering webmentions from webmention.io