jrherr
I am an Assistant Professor at the University of Nebraska. I study the genomics and metagenomics of plant-microbe interactions with a focus on mycology.
University of NebraskaLincoln, NE, USA
Pinned Repositories
2014-04-29-gwu
Software Carpentry Bootcamp at George Washington University on April 29th-30th 2014
2015-01-27-msu_icer
Software Carpentry Bootcamp held at Michigan State University on January 27th to 29th, 2015
alignerviz
A simple tool to visualize sequences using Vlachos et al's technique
bioinformatics_scripts
Just a bunch of scripts I use for bioinformatics -- feel free to use, reuse, and improve
fasta_utilities
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
ggplot2-tutorial
Teaching materials for the R package ggplot2
jrherr.github.com
Open Notebook
oneliners
Useful bash one-liners for bioinformatics.
quick_basic_R_tutorial
This is a quick and basic tutorial for R
jrherr's Repositories
jrherr/bioinformatics_scripts
Just a bunch of scripts I use for bioinformatics -- feel free to use, reuse, and improve
jrherr/ggplot2-tutorial
Teaching materials for the R package ggplot2
jrherr/2016-02-22-isu
jrherr/2016-03-07-uconn
jrherr/2017-09-03-Creighton_University
Repo for Software Carpentry at Creighton University, August 3rd & 4th, 2016
jrherr/2022-04-01-prof_dev_social_media
jrherr/boring
Boring website.
jrherr/effective-garbanzo
This is an example of git and git hub collaboration
jrherr/elabftw
:notebook: Lab manager, experiment notebook, database for research labs
jrherr/email_signature
This is my email signature HTML & CSS
jrherr/fluffy-octo-meme
fluffy-octo-meme is the latest craze in examples
jrherr/fun_data_for_class
data for class
jrherr/furry-octo-guacamole
an example using git and github
jrherr/GC-Paper
jrherr/genome
data for genome annotation
jrherr/genome_alignment_example
an example of some genome alignment stuff
jrherr/genomics-workshop
Genomics Workshop Overview
jrherr/git-novice
Software Carpentry introduction to Git for novices.
jrherr/kraken
Kraken taxonomic sequence classification system
jrherr/kraken-biom
Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/).
jrherr/lab_page
This is the website of my research laboratory
jrherr/latex-grant
LaTeX classes for formatting scientific documents, including US federal grant proposals.
jrherr/localblast
A short tutorial on how to run local BLAST.
jrherr/reimagined_chowder
Robot's reimagining of soups and stews
jrherr/RNA-DESeq2
Template for DESeq2 Analysis of RNA-seq data
jrherr/shmlast
blast, shmlast
jrherr/teaching
resources for teaching
jrherr/web
Web content for Meren Lab
jrherr/Wheat_Project
Wheat Microbiome Project Stuff
jrherr/wrangling-genomics
Data Wrangling and Processing for Genomics