jrjhealey

Not really a bioinformatician, I just play one on the internet.

Pinned Repositories

BadassBash
An all-singing, all-dancing, bash template for cool CLI scripts (a bash cookiecutter).
Language:Shell7 1 00
bash_functions
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
5 1 05
bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
Language:Python49 3 117
chimera
Scripts for UCSF Chimera and PyChimera, for data analysis and graphics generation
Language:Python5 1 03
MultiGeneBlastParser
Script(s) to handle the output of MultiGeneBlast (http://multigeneblast.sourceforge.net/)
Language:Python4 1 11
Oread
A commandline and GUI tool for the creation of Artemis/Artemis Comparison Tool files.
Language:Python2 1 00
prymer
Decided to write my own thingy to automatically generate/test primer sequences.
Language:Python3 1 01
PYlogeny
A tool for conversion from assorted NCBI Accessions to NCBI Taxonomy IDs
Language:Python5 1 13

jrjhealey's Repositories

jrjhealey/bioinfo-tools
Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
Language:Python49 3 117
jrjhealey/BadassBash
An all-singing, all-dancing, bash template for cool CLI scripts (a bash cookiecutter).
Language:Shell7 1 00
jrjhealey/bash_functions
Functions I keep in my .bash files. Usually written badly by myself (to handle only very specific cases) or also possibly stolen off the internetz
5 1 05
jrjhealey/chimera
Scripts for UCSF Chimera and PyChimera, for data analysis and graphics generation
Language:Python5 1 03
jrjhealey/PYlogeny
A tool for conversion from assorted NCBI Accessions to NCBI Taxonomy IDs
Language:Python5 1 13
jrjhealey/MultiGeneBlastParser
Script(s) to handle the output of MultiGeneBlast (http://multigeneblast.sourceforge.net/)
Language:Python4 1 11
jrjhealey/prymer
Decided to write my own thingy to automatically generate/test primer sequences.
Language:Python3 1 01
jrjhealey/Oread
A commandline and GUI tool for the creation of Artemis/Artemis Comparison Tool files.
Language:Python2 1 00
jrjhealey/DESeq2-Tutorial
A transliteration of the DESeq2 Tutorial by Dave Wheeler which no long seems to be live, so I'm preserving it in case it disappears from the WaybackMachine
1 1 01
jrjhealey/ISIS
Nothing to do with the Islamic State; a repository to hold data and workflows for In Silico Immunogenicity Studies
Language:Python1 2 0
jrjhealey/Italicise_apalike_bst
A modified `apalike.bst` LaTeX bibliography style file to include italicised 'et al.'s'
1 1 01
jrjhealey/journalbot
Source code for Journal club bot at https://twitter.com/JC_pathogenomic
Language:Python1 1 0
jrjhealey/ncbi-genome-download
Scripts to download genomes from the NCBI FTP servers
Language:Python1 1 0
jrjhealey/PerlTengwarTranscriber
This is an English -> TeX transcriber to typeset Tolkein's Elvish in LaTeX. I struggled to find this code online so am reuploading it here.
Language:Perl1 1 01
jrjhealey/tengwarscript-install-guide
A guide to installing and using Tengwar fonts with LaTeX.
Language:Shell1 1 0
jrjhealey/thesis
Thesis
Language:TeX1 2 0
jrjhealey/AdventOfCode2018
Solutions to the Advent of Code challenge 2018 (probably not perfect).
Language:Python1 0
jrjhealey/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
jrjhealey/biopython
Official git repository for Biopython (converted from CVS)
Language:Python1 0
jrjhealey/biostar-central
Biostar Q&A
jrjhealey/DnaFeaturesViewer
:eye: Python library to plot DNA sequence features (e.g. from Genbank files)
Language:Python1 0
jrjhealey/dnaplotlib
DNA plotting library for Python
Language:Python1 0
jrjhealey/jrjhealey.github.io
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
Language:HTML1 0
jrjhealey/PhotoCore
Workflow for creating a core/pangenome of Photorhabdus
Language:Shell
jrjhealey/pycyborg
Reverse engineering a USB protocol for cyborg gaming lights
Language:Python1 0
jrjhealey/randomuseful
Non-specific scripts to serve as reminders/backups
Language:Shell1 0
jrjhealey/sentry
My own take on https://github.com/arlowhite/process-watcher
Language:Python
jrjhealey/stuff_for_others
Horrible hacky scripts I've written to help people out in a rush.
Language:Python1 0
jrjhealey/SysAdmin
Miscellaneous scripts and reminders for server administration
Language:Shell1 0
jrjhealey/TeX-SNFG
A collection of predefined TeX/LaTeX/Tikz commands or macros for various glycans, as depicted in the Symbol Nomenclature for Glycans (SNFG - https://www.ncbi.nlm.nih.gov/glycans/snfg.html) standard - Work in Progress
Language:TeX1 1