Pinned Repositories
BiocBook
HiCExperiment
Importing and manipulating Hi-C data in R
HiContacts
Analyzing Hi-C data in R with HiCExperiment objects
momics
OHCA
Orchestrating Hi-C analysis with Bioconductor
periodicDNA
periodicDNA R package
plyinteractions
tidyCoverage
tinyMapper
Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...)
VplotR
R package to easily generate "V-plots" of paired-end sequencing data over regions of interest
js2264's Repositories
js2264/tidyCoverage
js2264/HiContacts
Analyzing Hi-C data in R with HiCExperiment objects
js2264/HiCExperiment
Importing and manipulating Hi-C data in R
js2264/OHCA
Orchestrating Hi-C analysis with Bioconductor
js2264/tinyMapper
Versatile "quick'n'dirty" mapper for genome-wide assays (e.g. ChIP-seq, ATAC-seq, RNA-seq, ...)
js2264/Bioc2024tidyworkshop
Repository for the Bioc2024 workshop on manipulating genomic data the tidy way.
js2264/BiocBook
js2264/BiocBook.tidyomics
BiocBook
js2264/HiCool
Processing Hi-C raw data within R
js2264/js2264.github.io
Personal website
js2264/metaTOR
Metagenomic binning based on Hi-C data
js2264/autobcl2fastq
Automatically fetch data from sequencer directory, process with with bcl2fastq and run some preliminary QCs
js2264/momics
js2264/plyinteractions
js2264/bacterial_genome
js2264/bioconda-recipes
Conda recipes for the bioconda channel.
js2264/chromnn
js2264/EnsemblGenomes
js2264/HiContactsData
HiContacts companion data package
js2264/js2264
js2264/MCCs_cell_cycle_variant
js2264/metamlg
js2264/nucFinder
js2264/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
js2264/rtracklayer
R interface to genome annotation files and the UCSC genome browser
js2264/rworkflows
Continuous integration for R packages. Automates testing, documentation website building, and containerised deployment.
js2264/scRNAseq-workshop
Content of scRNAseq workshop
js2264/scRNAseq_Physalia_2024
js2264/SynthChromosomes.sourceCode
js2264/test_snakemake