jturcino

Postdoc in the Geisbert lab at UTMB

UTMB HealthGalveston, TX

Pinned Repositories

abaco-d2s
abaco actor for docker2singularity
Language:Python00
abaco-d2s-agave
An abaco actor for running docker2singularity and saving images to an Agave storage system
Language:Python00
abaco-d2s-generic
An abaco actor for running docker2singularity and saving images to Stampede2 via the work filesystem mount
Language:Python0 2 00
glycresoft-qsub-templates
qsub templates and generator scripts for working with glycresoft on the SCC at BU
Language:Shell1 2 00
alpha-spring2021
Analysis of the alpha VoC on the BU campus
Language:Python0 2 00
athletic-cluster
Bioinformatic methods for iScience paper "Understanding SARS-CoV-2 transmission: Linking traditional contact tracing with genomic surveillance of a SARS-CoV-2 student cluster on a large urban campus"
Language:Python0 2 00
snv-clustering
Clustering samples via pairwise comparison of SNV sets
Language:R0 2 00
transcriptomics-bulk
Jackie's bulk RNA-seq workflow
Language:Shell0 2 00
virus-amplicon
Processing data from virus genome amplicon sequencing
Language:Shell1 3 01
virus-shotgun
Characterize virus stocks
Language:Shell2 2 00

jturcino/glycresoft-qsub-templates
qsub templates and generator scripts for working with glycresoft on the SCC at BU
Language:Shell1 2 00
jturcino/abaco-d2s
abaco actor for docker2singularity
Language:Python00
jturcino/abaco-d2s-agave
An abaco actor for running docker2singularity and saving images to an Agave storage system
Language:Python00
jturcino/abaco-d2s-generic
An abaco actor for running docker2singularity and saving images to Stampede2 via the work filesystem mount
Language:Python0 2 00
jturcino/biocontainers-singularity
scripts for running and maintaining biocontainer singularity images
Language:Python00
jturcino/cyverse-sdk
Software development kit supporting the CyVerse Science APIs
Language:Shell00
jturcino/docker-to-singularity
Agave application for converting docker container to singularity image
Language:Shell00
jturcino/github-app-registration
Script to update Agave applications using Github webhooks
Language:Shell01
jturcino/glycan-distributions
Python script and web app for generating cosine similarity and normalized Kullback-Leibler divergence for glycoproteins
Language:Python1
jturcino/register-agave-system
bash script for registering agave system using current system stats
Language:Shell
jturcino/run-biocontainer-singularity
version of run-singularity app modified to run biocontainer singularity images
Language:Shell
jturcino/vdj-cli
Set of CLI tools for interacting with VDJServer
Language:Python