justicengom
Justice Tresor Ngom Ngom’s research interests lie in molecular biology and the evolution of pathogens that cause disease burdens (TB, zoonotic pathogens, HIV)
Stellenbosch University,Tygerberg, Cape Town
Pinned Repositories
Bacterial_genomics_software_tools
Curated list of software tools for various aspects of prokaryote genomic analyses
bakHEAT
Visualize microbial evolution at the SNP level!
epistasis-KAN-BDQ-Mtbc-resistance
Jupyter Notebooks used in data analysis for "The role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in Mycobacterium tuberculosis complex" (Vargas et al. 2021)
in-host-Mtbc-dynamics
Jupyter Notebooks used in data analysis for "In-host population dynamics of Mycobacterium tuberculosis complex during active disease" (Vargas et al. 2021)
NTM-Profiler
pairwise_snp_differences
public-health-pipeline-best-practices
quanttb
QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.
sphae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
justicengom's Repositories
justicengom/Bacterial_genomics_software_tools
Curated list of software tools for various aspects of prokaryote genomic analyses
justicengom/bakHEAT
Visualize microbial evolution at the SNP level!
justicengom/public-health-pipeline-best-practices
justicengom/sphae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
justicengom/tidytacos
Functions to manipulate and visualize microbial community data
justicengom/awesome-bioinformatics-education
resources for bioinformatics education
justicengom/DeepPheWAS
An R package for phenotype generation and association testing for phenome wide associations studies (PheWAS)
justicengom/disease_dynamics
justicengom/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
justicengom/esquisse
RStudio add-in to make plots interactively with ggplot2
justicengom/frex
justicengom/ggplot2-book
ggplot2: elegant graphics for data analysis
justicengom/ggplot2-graphic-design
"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
justicengom/GSBAfrica2023
GSBAfrica course manual site
justicengom/gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
justicengom/iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
justicengom/MetaCerberus
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
justicengom/MPCMArchive
Archive of Online Practical Materials for the book of Modern Phylogenetic Comparative Methods (ed. Garamszegi, 2014)
justicengom/Online_R_learning
Online R learning for applied statistics
justicengom/P-DOR
Quick and easy outbreak reconstruction pipeline
justicengom/PopPIPE
Population analysis PIPEline 🛠🧬
justicengom/PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
justicengom/PythonTUBS
Python introduction for life scientists
justicengom/scientisttools
justicengom/seqtk
Toolkit for processing sequences in FASTA/Q formats
justicengom/sim_cluster_MTB
Pipeline to simulate the evolution of genome sequences of MTB under different conditions
justicengom/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
justicengom/WAS
Weekly Analytics Show
justicengom/workshop
justicengom/wowchemy-hugo-themes
😍 EASILY BUILD THE WEBSITE YOU WANT - NO CODE, JUST MARKDOWN BLOCKS! 创建在线课程，学术简历或初创网站。#OpenScience