justicengom
Justice Tresor Ngom Ngom’s research interests lie in molecular biology and the evolution of pathogens that cause disease burdens (TB, zoonotic pathogens, HIV)
Stellenbosch University,Tygerberg, Cape Town
Pinned Repositories
Bacterial_genomics_software_tools
Curated list of software tools for various aspects of prokaryote genomic analyses
bakHEAT
Visualize microbial evolution at the SNP level!
epistasis-KAN-BDQ-Mtbc-resistance
Jupyter Notebooks used in data analysis for "The role of epistasis in amikacin, kanamycin, bedaquiline, and clofazimine resistance in Mycobacterium tuberculosis complex" (Vargas et al. 2021)
in-host-Mtbc-dynamics
Jupyter Notebooks used in data analysis for "In-host population dynamics of Mycobacterium tuberculosis complex during active disease" (Vargas et al. 2021)
NTM-Profiler
pairwise_snp_differences
public-health-pipeline-best-practices
quanttb
QuantTB is a SNP based method to identify and quantify individual strains present in tuberculosis whole genome sequencing datasets.
sphae
NEW!!! Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!
tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
justicengom's Repositories
justicengom/bayroot
Bayesian root-to-tip regression for dating reservoir sequences
justicengom/comp_mut
Compensatory mutations repo
justicengom/CompassCompact
justicengom/CourseComparativeMethods
Examples of application of comparative methods in R
justicengom/dataviz
A book covering the fundamentals of data visualization
justicengom/ddsr
Source code for the book "Doing Data Science in R" by Mark Andrews (SAGE publishers, 2021)
justicengom/DS3_Introduction_Python
justicengom/ds3_r_intro
justicengom/ffq
justicengom/GenePair
Statistical Methods for Modeling Spatially-Referenced Paired Genetic Relatedness Data
justicengom/ggcoverage
justicengom/githuR_Workshop
justicengom/helpful_links
justicengom/homoplasyFinder
justicengom/https-github.com-showteeth-ggcoverage
justicengom/modeltest
Best-fit model selection
justicengom/outbreaker2
Disease outbreak reconstruction from epidemiological and genetic data
justicengom/parsimony_sankoff
justicengom/PhyloDM
justicengom/PNWColors
A Pacific Northwest inspired R color palette package
justicengom/python_workshop_3
justicengom/PythonCrashCourse
justicengom/R-graph-gallery
justicengom/RCrashCourse_Book
justicengom/semester-biology
justicengom/stanford-cme-106-probability-and-statistics
justicengom/StatsCrashCourse
justicengom/SydneyPhyloWorkshop
Sydney Phylogenetics Workshop
justicengom/teach
justicengom/wm_training_202205
Theiagen Genomics repository for workflow management training