jvhagey
Animal Biologist and Bioinformatician CDC - Division of Health Quality Promotion (They/Them/Theirs)
CDC (work) + personal projectsAtlanta, GA
Pinned Repositories
CDRF-CA_Dairy_Fecal_Microbiome
Scripts for 16S sequence processing and R analysis
CDRF_Metagenomics
Scripts used for processing of metagenomic data on CDRF project
Coursera
scripts for python courses
Depeters_RumenSampling_2018
16s analysis for Depeters rumen sampling study
jvhagey.github.io
Home page that links all github projects
public_health_viral_genomics
Tutorials
Landing Page for Tutorials
Utility_Scripts
A variety of scripts used to process or parse sequencing files
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
titan
Public health bioinformatics repository for WDL workflows to analyze viral genomes.
jvhagey's Repositories
jvhagey/CDRF-CA_Dairy_Fecal_Microbiome
Scripts for 16S sequence processing and R analysis
jvhagey/CDRF_Metagenomics
Scripts used for processing of metagenomic data on CDRF project
jvhagey/Coursera
scripts for python courses
jvhagey/Tutorials
Landing Page for Tutorials
jvhagey/Utility_Scripts
A variety of scripts used to process or parse sequencing files
jvhagey/alembic
⚗️ A Jekyll boilerplate theme designed to be a starting point for any Jekyll website
jvhagey/Depeters_RumenSampling_2018
16s analysis for Depeters rumen sampling study
jvhagey/jvhagey.github.io
Home page that links all github projects
jvhagey/public_health_viral_genomics
jvhagey/C_Parvum_CompGenomics
jvhagey/Cryptosporidum_Comparative_Genomics
Machine learning project for cryptosporidum comparative genomics
jvhagey/datasets-sars-cov-2
jvhagey/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
jvhagey/documentation-theme-jekyll
A Jekyll-based theme designed for documentation and help systems. See the link for detailed instructions on setting up and configuring everything.
jvhagey/for_gitlab
jvhagey/GAMMA
Gene Allele Mutation Microbial Assessment
jvhagey/jvhagey
jvhagey/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
jvhagey/lantaoyu.github.io
Github Pages template for academic personal websites
jvhagey/misc
jvhagey/misc2018
jvhagey/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
jvhagey/phoenix
🔥🐦🔥PHoeNIx: A short-read pipeline for healthcare-associated and antimicrobial resistant pathogens
jvhagey/queermetabolomics2018
jvhagey/test-datasets
Test data to be used for automated testing with the nf-core pipelines