Pinned Repositories
awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
BXD_str_expand_prop_pub
Workflow and analyses scripts for: “A novel quantitative trait locus implicates Msh3 in genome-wide short tandem repeat expansion propensity in mice”
cattleGTEx
The cattle Genotype-Tissue Expression atlas v1
CHM13
The complete sequence of a human genome
CNView
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
CPG
Building a Chinese pan-genome of 486 individuals
Data-Analysis-for-SDs-in-T2T-CHM13
Figures for the CHM13 T2T SD paper.
germline_mutation_rate
Pipeline to estimate germline mutation rate from NGS pedigree data
Sus_Liver_eSTRs
Mapping short tandem repeats for liver gene expression traits help to prioritize potential causal variants for complex traits in pigs
Susrepeats
A repository of Sus scrofa short tandem repeats (STRs) project
jxlabWzZ's Repositories
jxlabWzZ/Sus_Liver_eSTRs
Mapping short tandem repeats for liver gene expression traits help to prioritize potential causal variants for complex traits in pigs
jxlabWzZ/Susrepeats
A repository of Sus scrofa short tandem repeats (STRs) project
jxlabWzZ/awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
jxlabWzZ/BXD_str_expand_prop_pub
Workflow and analyses scripts for: “A novel quantitative trait locus implicates Msh3 in genome-wide short tandem repeat expansion propensity in mice”
jxlabWzZ/cattleGTEx
The cattle Genotype-Tissue Expression atlas v1
jxlabWzZ/CHM13
The complete sequence of a human genome
jxlabWzZ/CNView
Visualization and annotation of CNVs from population-scale whole-genome sequencing data
jxlabWzZ/CPG
Building a Chinese pan-genome of 486 individuals
jxlabWzZ/Data-Analysis-for-SDs-in-T2T-CHM13
Figures for the CHM13 T2T SD paper.
jxlabWzZ/germline_mutation_rate
Pipeline to estimate germline mutation rate from NGS pedigree data
jxlabWzZ/HiC_tools
A collection of tools for Hi-C data analysis
jxlabWzZ/i2QTL-SV-STR-analysis
Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as part of the i2QTL consortium. This data set consists of sequencing data from the iPSCORE (Frazer lab) and HipSci projects.
jxlabWzZ/IAGS
jxlabWzZ/Jasmine
Jasmine: SV Merging Across Samples
jxlabWzZ/lorals_paper_code
jxlabWzZ/marmoset
jxlabWzZ/MUTEA
Python package to simulate and estimate Y-STR mutation models
jxlabWzZ/nanopore-sv
The detection of structural variations in maize population
jxlabWzZ/non-B_gfa
Identify non-B forming motifs
jxlabWzZ/Pear_Haplotype_Genome
Codes for pear haplotype genome and pangenome graph construction
jxlabWzZ/PigGTEx-Pipeline-v0
jxlabWzZ/plotsr
Tool to plot synteny and structural rearrangements between genomes
jxlabWzZ/SOAPdenovo2
Next generation sequencing reads de novo assembler.
jxlabWzZ/Sus_MEVs_WGS
Mobile element variation contributes to population diversity and gene regulation in pigs
jxlabWzZ/SV-ONT-Tibetan
Characterization of Structural Variation in Chinese samples
jxlabWzZ/sv-pipeline
Pipeline for structural variation detection in cohorts
jxlabWzZ/t2t-variants
jxlabWzZ/TMP_FILES
jxlabWzZ/vg
tools for working with genome variation graphs
jxlabWzZ/y-amplicon-evolution
Scripts used in Teitz et. al 2018