/i2QTL-SV-STR-analysis

Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as part of the i2QTL consortium. This data set consists of sequencing data from the iPSCORE (Frazer lab) and HipSci projects.

Primary LanguageJupyter Notebook


i2QTL-SV-STR-analysis

Code used to process and analyze structural variation (SVs) and short tandem repeat variation (STRs) as part of the i2QTL Consortium. Variants were identified in 719 deeply sequenced whole genomes combining data from two large iPSC collections, iPSCORE (Frazer lab) and HipSci.

Notebooks

This directory generally contains ipython notebooks for analysis and processing/exploration of data when sharable

Notebooks/Figures

This directory contains code to generate Figures this study

Scripts

This notebook contains ipynb and and .py python scripts developed during the project to process variants

djPyi2

This is a python package that I made to help with this project, and has some useful functions. Code will not be runnable without this package.