Pinned Repositories
MMQTL
MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control for population structure and relatedness
PolyQTL
A Bayesian method performing multiple eQTL detection with a control for population structure and relatedness
Analysis_code_for_MPRA
Used codes to detect allelic effect on MPRA data
dap
software package for integrative genetic association analysis
DPolyQTL
GEMMA
Genome-wide Efficient Mixed Model Association
Multi-eQTL_polyGeneic
For this package, I'm trying to develop a Bayesian method to perform multiple eQTL detection with a control for population structure or relatedness when the phenotype has a polygenetic background
Parallel_CAVIAR
In current version of CAVIAR (https://github.com/fhormoz/caviar), it runs in a serial manner. To speed up the running, I convert it to a parallel version, which applies openmp to run with multi-thread. Simulation results demonstrate that when explored variants are massive, the running time is only 1/nthread of original version.
Script-for-constraint-paper
This repository contains scripts that I used to perform simulation with CAGE genotype to demonstrate the interference between multiple causal variants when conducting eQTL detection
jxzb1988's Repositories
jxzb1988/Analysis_code_for_MPRA
Used codes to detect allelic effect on MPRA data
jxzb1988/MMQTL
MMQTL is a statistical package applying meta-analysis to detect multiple QTL signals integrating signals among conditions, with control for population structure and relatedness
jxzb1988/DPolyQTL
jxzb1988/PolyQTL
A Bayesian method performing multiple eQTL detection with a control for population structure and relatedness
jxzb1988/GEMMA
Genome-wide Efficient Mixed Model Association
jxzb1988/dap
software package for integrative genetic association analysis
jxzb1988/Multi-eQTL_polyGeneic
For this package, I'm trying to develop a Bayesian method to perform multiple eQTL detection with a control for population structure or relatedness when the phenotype has a polygenetic background
jxzb1988/Script-for-constraint-paper
This repository contains scripts that I used to perform simulation with CAGE genotype to demonstrate the interference between multiple causal variants when conducting eQTL detection
jxzb1988/Parallel_CAVIAR
In current version of CAVIAR (https://github.com/fhormoz/caviar), it runs in a serial manner. To speed up the running, I convert it to a parallel version, which applies openmp to run with multi-thread. Simulation results demonstrate that when explored variants are massive, the running time is only 1/nthread of original version.