k-florek

k-florek's Stars

• twobulls/easy-genomics

  Language:TypeScript9

• UPHL-BioNGS/Donut_Falls

  Basic workflow for nanopore sequencing data

  Language:Nextflow157

• wslh-bio/SPNtypeID

  SPNtypeID is a Nextflow pipeline used for genome assembly and serotyping of Streptococcus pneumoniae.

  Language:Nextflow2

• wslh-bio/ar_report_generator

  AR Report Generator is used to render a report from the output of pipelines that identify antibiotic resistance (AR) genes and/or examine prokaryote relatedness in outbreaks

  Language:Dockerfile71

• wslh-bio/spriggan

  Spriggan is a pipeline used for assembly of bacterial whole genome sequence data and identification of antibiotic resistance genes.

  Language:Python143

• nektos/act

  Run your GitHub Actions locally 🚀

  Language:Go56.4k1.4k

• jerryji1993/DNABERT

  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

  Language:Python615159

• quick-lab/SARS-CoV-2

  SARs-CoV-2 Primer schemes

  Language:HTML158

• StaPH-B/staphb_toolkit

  Python Toolkit for using containerized programs in either Singularity or Docker

  Language:Python2619

• CDCgov/mycosnp-nf

  CDCgov/mycosnp-nf

  Language:Nextflow4034

• boschkundendienst/guacamole-docker-compose

  Guacamole with docker-compose using PostgreSQL, nginx with SSL (self-signed)

  Language:Shell1k421

• connor-lab/ncov2019-artic-nf

  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

  Language:Nextflow9186

• wslh-bio/dryad

  Dryad is a Nextflow pipeline for examining prokaryote relatedness. Dryad can perform a reference free analysis and/or SNP analysis.

  Language:Groovy176

• marbl/Krona

  Interactively explore metagenomes and more from a web browser.

  Language:JavaScript467102

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++741275

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python44348