kad-ecoli
Bioinformatics algorithm development for protein and RNA structure prediction, function annotation, structure alignment and interaction prediction.
University of MichiganAnn Arbor
Pinned Repositories
BeEM
Conversion of PDBx/mmCIF files to best effort/minimal PDB files
hhsuite2
A fork for the old hhsuite-2.0.16
mmCIF2BioLiP
BioLiP2 database curation and web interface
pdb2fasta
implementing PDB to FASTA file format conversion in multiple languages
pdc
Protein data compressor
python_scripts
scripts for parsing PDB, fasta, and GO
rateratio_test
Python implement of rateratio.test R package
TMalign
This repo is outdated. Please use https://github.com/pylelab/USalign instead
rMSA
RNA Multiple Sequence Alignment
USalign
Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
kad-ecoli's Repositories
kad-ecoli/mmCIF2BioLiP
BioLiP2 database curation and web interface
kad-ecoli/BeEM
Conversion of PDBx/mmCIF files to best effort/minimal PDB files
kad-ecoli/python_scripts
scripts for parsing PDB, fasta, and GO
kad-ecoli/TMalign
This repo is outdated. Please use https://github.com/pylelab/USalign instead
kad-ecoli/hhsuite2
A fork for the old hhsuite-2.0.16
kad-ecoli/pdc
Protein data compressor
kad-ecoli/MSAParser
utilties for parsing FASTA and PSICOV format multiple sequence alignment
kad-ecoli/baseline
CAFA baseline methods
kad-ecoli/CE
Combinatorial Extension (CE)
kad-ecoli/PDBParser
c++ programs for parsing PDB files
kad-ecoli/rMSA2
RNA Multiple Sequence Alignment
kad-ecoli/blastKNN_benchmark
kad-ecoli/CAFAbeyond
Evaluating the feasibility of extending CAFA to larger dataset
kad-ecoli/furna
kad-ecoli/minimolprobity
kad-ecoli/obo2csv
kad-ecoli/rateratio_test
Python implement of rateratio.test R package
kad-ecoli/blastKNN_benchmark_cafa3
kad-ecoli/docker-lamp-cgi
A simple LAMP image using Ubuntu, Apache, PHP and MySql in a single image with CGI support
kad-ecoli/dssp
The DSSP building software
kad-ecoli/FLORA
kad-ecoli/GoFDR
kad-ecoli/HomodimerDB
kad-ecoli/MRTModSeq
Modification profiling with Marathon RT
kad-ecoli/PeptideBuilder
kad-ecoli/psipred
PSIPRED Protein Secondary Structure Predictor
kad-ecoli/qdiamond
Accelerated BLAST compatible local sequence aligner.
kad-ecoli/rna3db
maintain local copy of RNA structure database
kad-ecoli/RREntropyScore
Python project: calculating entropy-based score for residue-residue contact predictions in CASP.
kad-ecoli/uniprot_figure
ploting trembl vs swissprot vs pdb