obo2csv go.obo is_a.csv name.csv alt_id.csv
convert obo format ontology definition to tab-delimited text
Input:
go.obo - obo format ontology definition
Output:
is_a.csv - GO_ID Aspect is_a_direct is_a_indirect
name.csv - GO_ID Aspect name
alt_id.csv - alt_id GO_ID
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backpropagate input.txt is_a.csv alt_id.csv output.txt
back-propagate parent GO terms for the list of input GO terms
Input:
input.txt - list of input GO terms. GO terms separated by comma in
the same line will be back-propagate together. GO terms
at differnet lines will be be back-propagated separately.
is_a.csv - GO_ID Aspect is_a_direct is_a_indirect
alt_id.csv - alt_id GO_ID
Output:
output.txt - list of input GO terms and their parent terms
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curate_GAF goinput.txt is_a.csv alt_id.csv output.txt
back-propagate parent GO terms for the list of input GO terms
Input:
input.txt - list of input GO terms. GO terms separated by comma in
the same line will be back-propagate together. GO terms
at differnet lines will be be back-propagated separately.
is_a.csv - GO_ID Aspect is_a_direct is_a_indirect
alt_id.csv - alt_id GO_ID
Output:
output.txt - list of input GO terms and their parent terms