kaizhang
I am a computational biologist who develops and applies systems biology approaches to study gene regulation.
@regulatory-genomics @ren-labHangzhou, China
Pinned Repositories
anndata-rs
bioinformatics-toolkit
A collection of bioinformatics algorithms
clustering
fast clustering algorithms
haskell-igraph
Haskell bindings to igraph library.
haskell-plot
2D plotting library in pure haskell
SciFlow
Scientific workflow management
single-cell-benchmark
SnapATAC2
Single-cell epigenomics analysis tools
Taiji
This project has been moved to:
Taiji
All-in-one analysis pipeline
kaizhang's Repositories
kaizhang/SnapATAC2
Single-cell epigenomics analysis tools
kaizhang/SciFlow
Scientific workflow management
kaizhang/anndata-rs
kaizhang/clustering
fast clustering algorithms
kaizhang/bioinformatics-toolkit
A collection of bioinformatics algorithms
kaizhang/haskell-igraph
Haskell bindings to igraph library.
kaizhang/Taiji
This project has been moved to:
kaizhang/single-cell-benchmark
kaizhang/HsHTSLib
kaizhang/matrices
Haskell matrix library
kaizhang/LDSC
kaizhang/DBPnet
Inferring cooperation of DNA binding proteins in 3D genome.
kaizhang/drmaa
A very simple Haskell bindings to drmaa library.
kaizhang/hpc-cluster
Automate the process of building HPC clusters.
kaizhang/anndata
Annotated data.
kaizhang/bavaria
Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
kaizhang/bbi
Tools for working with Big Binary Indexed files (bigBed/bigWig)
kaizhang/bed-utils
kaizhang/ChromVAR
Haskell implementation of the chromVAR algorithm with constant memory usage.
kaizhang/epigenomics-analysis
kaizhang/hdf5-rust
HDF5 for Rust
kaizhang/kaizhang.github.io
kaizhang/matrix-sized
Generic matrix with statically known size and bindings to C++ linear algebra libraries (Eigen, Spectra).
kaizhang/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
kaizhang/pandoc-crossref
Pandoc filter for cross-references
kaizhang/RFECS
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002968
kaizhang/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
kaizhang/rust-n5
Rust implementation of the N5 "Not HDF5" tensor file system format
kaizhang/scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
kaizhang/stackage
"Stable Hackage": vetted consistent packages from Hackage