kaizhang

I am a computational biologist who develops and applies systems biology approaches to study gene regulation.

@regulatory-genomics @ren-labHangzhou, China

Pinned Repositories

anndata-rs
Language:Rust27 4 103
bioinformatics-toolkit
A collection of bioinformatics algorithms
Language:Haskell12 3 23
clustering
fast clustering algorithms
Language:Haskell15 3 82
haskell-igraph
Haskell bindings to igraph library.
Language:C9 5 55
haskell-plot
2D plotting library in pure haskell
Language:Haskell10 4 11
SciFlow
Scientific workflow management
Language:Haskell51 10 23
single-cell-benchmark
Language:Nextflow8 3 03
SnapATAC2
Single-cell epigenomics analysis tools
Language:Python204 8 26422
Taiji
This project has been moved to:
Language:Haskell9 5 83
Taiji
All-in-one analysis pipeline
Language:Haskell34 5 469

kaizhang's Repositories

kaizhang/SnapATAC2
Single-cell epigenomics analysis tools
Language:Python204 8 26422
kaizhang/SciFlow
Scientific workflow management
Language:Haskell51 10 23
kaizhang/anndata-rs
Language:Rust27 4 103
kaizhang/clustering
fast clustering algorithms
Language:Haskell15 3 82
kaizhang/bioinformatics-toolkit
A collection of bioinformatics algorithms
Language:Haskell12 3 23
kaizhang/haskell-igraph
Haskell bindings to igraph library.
Language:C9 5 55
kaizhang/Taiji
This project has been moved to:
Language:Haskell9 5 83
kaizhang/single-cell-benchmark
Language:Nextflow8 3 03
kaizhang/HsHTSLib
Language:C6 4 00
kaizhang/matrices
Haskell matrix library
Language:Haskell5 3 34
kaizhang/LDSC
Language:Haskell3 3 01
kaizhang/DBPnet
Inferring cooperation of DNA binding proteins in 3D genome.
Language:Haskell1 3 21
kaizhang/drmaa
A very simple Haskell bindings to drmaa library.
Language:Haskell1 3 0
kaizhang/hpc-cluster
Automate the process of building HPC clusters.
Language:Haskell1 3 0
kaizhang/anndata
Annotated data.
Language:Python2 0
kaizhang/bavaria
Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq datasets
Language:Jupyter Notebook1 0
kaizhang/bbi
Tools for working with Big Binary Indexed files (bigBed/bigWig)
Language:Haskell3 0
kaizhang/bed-utils
Language:Rust3 0
kaizhang/ChromVAR
Haskell implementation of the chromVAR algorithm with constant memory usage.
Language:Haskell3 0
kaizhang/epigenomics-analysis
Language:TeX3 0
kaizhang/hdf5-rust
HDF5 for Rust
Language:Rust2 0
kaizhang/kaizhang.github.io
Language:Haskell3 0
kaizhang/matrix-sized
Generic matrix with statically known size and bindings to C++ linear algebra libraries (Eigen, Spectra).
Language:C++3 0
kaizhang/minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Language:C2 0
kaizhang/pandoc-crossref
Pandoc filter for cross-references
Language:Haskell2 0
kaizhang/RFECS
http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002968
Language:MATLAB4 53
kaizhang/rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
Language:Rust2 0
kaizhang/rust-n5
Rust implementation of the N5 "Not HDF5" tensor file system format
Language:Rust1 0
kaizhang/scib-pipeline
Snakemake pipeline that works with the scIB package to benchmark data integration methods.
Language:Python1 0
kaizhang/stackage
"Stable Hackage": vetted consistent packages from Hackage
Language:Shell3 0