Pinned Repositories
amazon-genomics-cli
aws-genomics-workflows
Genomics Workflows on AWS
BenchmarkAlignment
BurkittLymphomaR
R package to accompany analysis documented in the burkitt_lymphoma repo
causal-inference-resources
Introductory material for learning about causal inference
coding-interview-university
A complete computer science study plan to become a software engineer.
cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
dapars
DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)
rag-chatgpt-langchain-elevenLabs
An AI voice chatbot that uses my voice for answering questions about personal documents.
ZebReg
An Open3D-based tool for 3-dimensional rigid registration of whole tissue images using nuclei staining.
kane9530's Repositories
kane9530/rag-chatgpt-langchain-elevenLabs
An AI voice chatbot that uses my voice for answering questions about personal documents.
kane9530/ZebReg
An Open3D-based tool for 3-dimensional rigid registration of whole tissue images using nuclei staining.
kane9530/amazon-genomics-cli
kane9530/aws-genomics-workflows
Genomics Workflows on AWS
kane9530/causal-inference-resources
Introductory material for learning about causal inference
kane9530/coding-interview-university
A complete computer science study plan to become a software engineer.
kane9530/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
kane9530/gartician
kane9530/gedac-rnaseq-wdl
kane9530/hugo-blog-academic
kane9530/infercnv
Inferring CNV from Single-Cell RNA-Seq
kane9530/info8010-deep-learning
Lectures for INFO8010 - Deep Learning, ULiège
kane9530/kane9530.github.io
kane9530/kane9530_old
kane9530/lichess_web_scraping
kane9530/nextflow
A DSL for data-driven computational pipelines
kane9530/nextflow-cellrangeratac-scatacseq
kane9530/nextflow-rnaseq-dsl2
Updating the nextflow rnaseq tutorial to DSL-2 with modifications
kane9530/nichenetr
NicheNet: predict active ligand-target links between interacting cells
kane9530/odin-recipes
kane9530/regexcite-test
kane9530/rmats-turbo
kane9530/SComatic
A tool for detecting somatic variants in single cell data
kane9530/scRNA_shiny
scRNA-seq Shiny App
kane9530/scrnaseq-nextflow
Implement scrnaseq pipeline in the Nextflow workflow orchestrator
kane9530/scRNAseqTemplateR
kane9530/STAR
RNA-seq aligner
kane9530/starter-hugo-academic
kane9530/wdl
Workflow Description Language - Specification and Implementations
kane9530/xengsort_aizawa
Reproduce results of Aizawa et al., (2022) using xengsort software for classifying reads from xenograft samples