karkman
University lecturer in microbial bioinformatics. Interested in antibiotic resistance in the environment
University of Helsinki & @AlukeOy Finland
Pinned Repositories
crAssphage_project
Source code for the crAssphage project
GlobalSewage
Data analysis for Global Sewage project
MBDP_Genomics_2022
Course repository for the spring 2022 MBDP genomics course
MBDP_Metagenomics_2022
Course repository for MBDP metagenomics course 2022
MetagenomeCourse2019
Course material for the metagenomics course
Metagenomics2021
Metagenomics course
MMB-114_Genomics
Whole genome analysis teaching for the course 'MMB-114 Exploratory microbial research - lab course' of the University of Helsinki.
MMB-901_Metagenomics
MMB-901 metagenomics course repository
Physalia_EnvMetagenomics_2022
Environmental metagenomics, Spring 2022, Physalia Courses
physalia_metagenomics
Environmental metagenomics, Spring 2021, Physalia Courses
karkman's Repositories
karkman/crAssphage_project
Source code for the crAssphage project
karkman/web
Web content for Meren Lab
karkman/IODS-project
template for IODS course projects
karkman/MicrobialGenomeMetagenomeCourse
Bioinformatic course on bacterial genomics and metagenomics Helsinki December 2017
karkman/perchlorate-metagenome-2018
Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.
karkman/recipe
Quacamole recipe as an exercise
karkman/StARe_map
Map for StARe data
karkman/Wednesday18thMay