katemstevens

katemstevens's Stars

• raufs/skDER

  skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and metagenomics.

  Language:Python403

• twoXes/awesome-structural-bioinformatics

  Structural Bioinformatics is awesome. Throw your textbook in the garbage, light the garbage can on fire, and blend the ashes into your cold brew almond milk latte and read this.

  Language:Python6810

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 from Google Deepmind in Pytorch

  Language:Python1.3k155

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python34493

• blobtoolkit/blobtoolkit

  Interactive quality assessment of genome assemblies

  Language:JavaScript9011

• rhysnewell/aviary

  A hybrid assembly and MAG recovery pipeline (and more!)

  Language:Python8513

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python33678

• mikolmogorov/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C791168

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++733274

• danielecook/Awesome-Bioinformatics

  A curated list of awesome Bioinformatics libraries and software.

  3.2k619

• Kalan-Lab/zol

  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

  Language:Python504

• medema-group/BiG-SCAPE

  Similarity networks of biosynthetic gene clusters

  Language:JavaScript7527

• antismash/antismash

  antiSMASH

  Language:Python19065

• Kalan-Lab/lsaBGC

  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

  Language:Python374

• Finn-Lab/SanntiS

  SMBGC Annotation using Neural Networks Trained on Interpro Signatures

  Language:Python211

• anc95/ChatGPT-CodeReview

  🐥 A code review bot powered by ChatGPT

  Language:JavaScript4.1k399

• QuivrHQ/quivr

  Opiniated RAG for integrating GenAI in your apps 🧠 Focus on your product rather than the RAG. Easy integration in existing products with customisation! Any LLM: GPT4, Groq, Llama. Any Vectorstore: PGVector, Faiss. Any Files. Anyway you want.

  Language:Python36.8k3.6k