kcha
Head of Data Science, Genomics at BioSymetrics. Working at the intersection of computational biology, machine learning, and genomics.
Toronto, Ontario
Pinned Repositories
CHyMErA-Net
A deep learning framework for predicting efficient Cas12a guides
bike_share_ride_report
A Shiny dashboard for visualizing Bike Share Toronto trip data 🚲
colour_bar_builder
A Shiny app for creating custom colour bars 🌈
gopro_renamer
Python tool to change naming of chaptered video files from GoPro Hero 3GoPro HERO3 to HERO 2018 cameras
polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
psiplot
R package for plotting PSI values generated from vast-tools
ROKU
Method for identification tissue-specific genes
qapa
RNA-seq Quantification of Alternative Polyadenylation
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
kcha's Repositories
kcha/gopro_renamer
Python tool to change naming of chaptered video files from GoPro Hero 3GoPro HERO3 to HERO 2018 cameras
kcha/psiplot
R package for plotting PSI values generated from vast-tools
kcha/ROKU
Method for identification tissue-specific genes
kcha/bike_share_ride_report
A Shiny dashboard for visualizing Bike Share Toronto trip data 🚲
kcha/polyester
Bioconductor package "polyester", devel version. RNA-seq read simulator.
kcha/colour_bar_builder
A Shiny app for creating custom colour bars 🌈
kcha/AIF360
A comprehensive set of fairness metrics for datasets and machine learning models, explanations for these metrics, and algorithms to mitigate bias in datasets and models.
kcha/bio_utilities
Collection of miscellaneous bioinformatics-related scripts
kcha/bioconda-recipes
Conda recipes for the bioconda channel.
kcha/GOanalysis
Script for running Gene Ontology enrichment analysis in R. Works for human genes only.
kcha/kcha.github.io
kcha/prezto
The configuration framework for Zsh
kcha/psiplotter-app
A Shiny app for visualizing PSI values of alternative spilcing events from VAST-TOOLS
kcha/PyBLATPSL
A Python module for the PSL format from the BLAT alignment program
kcha/pyconserve
kcha/PySimpleGUI
Launched in 2018. It's 2022 and PySimpleGUI is actively developed & supported. Create complex windows simply. Supports tkinter, Qt, WxPython, Remi (in browser). Create GUI applications trivially with a full set of widgets. Multi-Window applications are also simple. 3.4 to 3.11 supported. 325+ Demo programs & Cookbook for rapid start. Extensive docu
kcha/seqcos
A .NET application for performing quality control of high-throughput sequencing reads. My intern project at Microsoft Research (2011).
kcha/unix_utilities
My collection of miscellaneous Unix-related utility scripts. This is also used as a sandbox for experimenting with different coding platforms.