vastgroup/vast-tools

Issues

• How to determine that a variable clipping event is a difference variable clipping event?

  #122 opened 3 months ago by happypiggyzjx
  0

• Number of reads in fastq files not detected correctly.

  #112 opened 2 years ago by Ni-Ar
  6

• Is it possible to handle long-read RNA-seq data with VAST-TOOL?

  #118 opened 3 months ago by happypiggyzjx
  1

• High reads that failed to align percentage

  #120 opened 3 months ago by sav0016
  1

• Selecting microexons

  #121 opened 3 months ago by pgupta3005
  3

• Confusing numbering in ALTD/ALTA events

  #119 opened 5 months ago by UBrau
  2

• binom.test error: 'x' must be nonnegative and integer

  #115 opened a year ago by ferngonz
  3

• combine problem reading RI_MakeTablePIR.R

  #114 opened a year ago by mponcecic
  11

• Compare vs Diff

  #98 opened a year ago by juliana-chu
  2

• Coordinate system zero- or one-based?

  #111 opened a year ago by Ni-Ar
  1

• Align issue "Failed in RunDBS_1.pl! at /usr/local/vast-tools/bin/RunDBS_1.pl"

  #104 opened a year ago by neusmf
  4

• Bowtie Problem

  #113 opened 2 years ago by liniguez
  0

• *** caught illegal operation *** address 0x2aaf6c5c56f0, cause 'illegal operand'

  #105 opened 2 years ago by msubirana
  3

• nanopore long read RNA seq

  #103 opened 3 years ago by charlinejonson
  1

• Error with psiplot

  #97 opened 3 years ago by juliana-chu
  6

• issue with 'align'

  #100 opened 3 years ago by yongshes
  7

• species are not in vastdb

  #102 opened 3 years ago by Yichel518
  1

• PE-150 RNA-Seq data: Trimming RNAseq reads to 50 nt sequences

  #99 opened 3 years ago by huangwb8
  1

• vast-tools diff failed and vast-tools compare_expr issue

  #92 opened 4 years ago by flolebill
  15

• Wrong Species Selected

  #96 opened 4 years ago by juliana-chu
  2

• question about read coverage and covariate adjustment

  #94 opened 4 years ago by imendizabalCIC
  4

• Proxy error when downloading db

  #95 opened 4 years ago by laurie-tonon
  1

• vast-tools combine failed

  #91 opened 4 years ago by flolebill
  10

• with_lib deprecated

  #89 opened 4 years ago by UBrau
  0

• Add quality filtering to diff

  #79 opened 4 years ago by UBrau
  3

• low alignment rates

  #88 opened 4 years ago by imendizabalCIC
  3

• vast-tools merge error in last stable version (v2.4.0)

  #87 opened 4 years ago by PedroBarbosa
  23

• diff module: MV calculation does not work in the provided containers?

  #85 opened 5 years ago by AngryMaciek
  3

• align issue

  #67 opened 5 years ago by briankalish
  4

• merge problem

  #68 opened 5 years ago by briankalish
  1

• Perl 5.26.1 error

  #65 opened 5 years ago by toniher
  1

• How to filter different AS event in two group sample outputted by diff module

  #80 opened 5 years ago by kehuangke
  7

• to_combine: zero inclusion/exclusion reads error

  #71 opened 5 years ago by araposo
  13

• alternative splicing in one group

  #81 opened 6 years ago by CLeib
  2

• combine error with --IR_version 1

  #72 opened 6 years ago by UBrau
  0

• diff output

  #77 opened 6 years ago by UBrau
  0

• Dockerfile

  #74 opened 6 years ago by fgypas
  8

• VastDB library for Drosophila melanogaster (dm6)

  #70 opened 6 years ago by kennyrebelo
  1

• Output of vast-tools diff

  #69 opened 6 years ago by BaluPai
  16

• Align problem

  #66 opened 7 years ago by danieleottaviani
  3

• Question about stranded RNA-seq data

  #62 opened 7 years ago by bontus
  5

• question about usage of --min_range

  #59 opened 7 years ago by ZheFrench
  5

• diff paired error

  #60 opened 7 years ago by rhugh-white
  0

• question baout trimming step.

  #61 opened 7 years ago
  2

• A bunch of questions

  #63 opened 7 years ago by ZheFrench
  13

• How to call vast-tools align with Dre

  #64 opened 7 years ago by alicezyj1
  1

• Is there a hg38 version VastDB ?

  #58 opened 8 years ago by ZheFrench
  5

• Problems w/ vast-tools diff

  #54 opened 9 years ago by nunolbmorais
  2

• diff --help not working

  #57 opened 8 years ago by UBrau
  0

• Sample IDs with Paired End Reads and cRPKM calculations

  #55 opened 8 years ago by evanfloden
  2