Pinned Repositories
lochness
Download your data to a data lake.
bet_using_t1
Mask from T1 is used to make better masks in diffusion space
freesurferSummary
linux_tutorial
roiPy
python ROI manipulation linker script based on fsl
spm
eddy-squeeze
Visualize extra information from FSL 6.0.1 eddy outputs
nifti-snapshot
Takes snapshot of Nifti images
pnl_randomise
FSL randomise related scripts
kcho's Repositories
kcho/freesurferSummary
kcho/linux_tutorial
kcho/CNN-Diffusion-MRIBrain-Segmentation
CNN based brain masking
kcho/djangocms-installer
Console wizard to bootstrap django CMS projects
kcho/dMRIharmonization
Multi-site dMRI harmonization
kcho/dpinterview
AV (Audio-Video) processing pipeline, used to generate QC Reports for the AV files.
kcho/ENIGMA_CHR_DTI
ENIGMA CHR DTI repository
kcho/github_test
Github testing repository
kcho/kcho.github.io
kcho/kcho_devel
Docker for kchoPipe development
kcho/kchopy
Tools for neuroimaging pipelines by kcho
kcho/LAMP-cortex
The Cortex data analysis pipeline for the LAMP Platform.
kcho/learn_readthedocs
learning readthedocs
kcho/learn_vim
Let's learn VIM
kcho/luigi-pnlpipe
NIFTI pipeline glued together using Luigi
kcho/nipy
Neuroimaging in Python FMRI analysis package
kcho/nipype
Workflows and interfaces for neuroimaging packages
kcho/NLP_boston_hackathon_2020_March
Boston hackathon 2020 March
kcho/pnlNipype
PNL pipeline for NIFTI images
kcho/pnlpipe
A Python-based framework for processing anatomical (T1, T2) and diffusion weighted images
kcho/PyCap
REDCap in Python
kcho/python-ggseg
Python module for ggseg-like visualizations
kcho/python_workshop
PNL python workshops
kcho/SlicerDiffusionQC
Quality checking of DWMRI
kcho/SlicerDiffusionQC_extra
kcho/TBSS
Tract based spatial statistics using ANTs and FSL
kcho/test_test
This is a test
kcho/utility
Storehouse for all utility scripts
kcho/vcrpy
Automatically mock your HTTP interactions to simplify and speed up testing
kcho/yaxil
YAXIL - Yet another XNAT interface library