kdoroschak

Computational Biologist. Data science + ML for computational + synthetic biology.

Pinned Repositories

datavis_campaign_1516
Language:Jupyter Notebook0 2 00
rrna_depletion
Language:Python10
tufts-dsd-confidence
Language:Python1 2 00
NanoporeTER-data
Data-only repository for the NanoporeTER paper.
00
NanoporeTERs
Code repository for 2019 NanoporeTERs paper.
Language:Jupyter Notebook7 10 11
Porcupine
Porcupine is a molecular tagging system to tag physical objects with DNA.
Language:Jupyter Notebook7 7 22
poretitioner
Language:Python3 3 771

kdoroschak's Repositories

kdoroschak/rrna_depletion
Language:Python10
kdoroschak/tufts-dsd-confidence
Language:Python1 2 00
kdoroschak/datavis_campaign_1516
Language:Jupyter Notebook0 2 00
kdoroschak/COVID-19
Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
1 0
kdoroschak/cs547
Language:Python2 0
kdoroschak/cs548-nanopore-align
Language:Jupyter Notebook2 0
kdoroschak/curlbot_v2
Language:Python
kdoroschak/didyprog
Differentiable Dynamic Programming
Language:Python2 0
kdoroschak/kernel-module-glowforge
Glowforge kernel module
Language:C1 0
kdoroschak/PyPore
Tools used to analyze data from nanopore-based experiments.
Language:Python2 1
kdoroschak/seqc
Language:R2 0
kdoroschak/yaml-checker
Retrieve items from the yaml file. Validate presence of files and directories with varying strictness.
Language:Python2 0