Program for analysing NGS data.
- Using a local folder containing htslib
git clone https://github.com/samtools/htslib.git;
git clone https://github.com/angsd/angsd.git;
cd htslib;make;cd ../angsd;make HTSSRC=../htslib
- Systemwide installation of htslib
git clone https://github.com/angsd/angsd.git;
cd angsd;make
- I've switched over to using htslib for parsing single reads (to allow for CRAM reading, while avoid having to write my own CRAM parser). I'm still using my own readpools. Users should therefore also download and install htslib.