Pinned Repositories
abc_inferences
AdmixTools
Tools test whether admixture occurred and more
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
ancestry_pipeline
Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc
angsd
Program for analysing NGS data.
Anopheles_gambiae_structure_LVB
Scripts to analyze population structure of Anopheles gambiae mosquitoes in Lake Victoria basin.
assemble_pipeline
Assemble and following pipeline used in wisent genome paper.
atenuis_wgs_pub
Acropora tenuis paper
Awesome-Bioinformatics
A curated list of awesome Bioinformatics libraries and software.
EMBOpopgen2017
EMBO Practical Course: Population Genomics: background and tools
keithmp's Repositories
keithmp/EMBOpopgen2017
EMBO Practical Course: Population Genomics: background and tools
keithmp/abc_inferences
keithmp/admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
keithmp/angsd
Program for analysing NGS data.
keithmp/atenuis_wgs_pub
Acropora tenuis paper
keithmp/bio_tools
Useful bioinformatic scripts
keithmp/biomi609spring2022
This repository contains curricular material, lecture notes, labs, assignments, exams, code, solutions from the Spring 2022 version of BIOMI 609 Computational Genomics and Bioinformatics offered at San Diego State University.
keithmp/biostack
keithmp/Camel_Genomics
Code for the analysis of 25 Camel genomes
keithmp/deeplearning-biology
A list of deep learning implementations in biology
keithmp/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
keithmp/DemographicInference
Scripts to compare models of divergence using diffusion approximation (dadi)
keithmp/Dsuite
Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
keithmp/easySFS
Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis
keithmp/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)
keithmp/gelada-genome
keithmp/genomics_general
General tools for genomic analyses.
keithmp/grenepipe
Snakemake pipeline for variant calling from raw sequences
keithmp/kiwi-holocene
keithmp/MiSTI
PSMC-based Migration and Split Time Inference (MiSTI) from two genomes
keithmp/ML-notes
notes about machine learning
keithmp/popgen-notes
Population genetics notes
keithmp/Population-genomics
Population genomics
keithmp/Python-100-Days
Python - 100天从新手到大师
keithmp/seqtk
Toolkit for processing sequences in FASTA/Q formats
keithmp/shadowsocks-windows
If you want to keep a secret, you must also hide it from yourself.
keithmp/Taming-the-BEAST-2019-Eh-Lectures
Repository for lectures held at the 2019 TTB workshop in Squamish, British Columbia.
keithmp/Taming-the-BEAST-2019-Sydney-Lectures
Repository for lectures held at the 2019 TTB workshop at the University of Sydney.
keithmp/wesanderson
A Wes Anderson color palette for R
keithmp/workshops
A collection of workshop material