keithmp

keithmp's Stars

• binary-husky/gpt_academic

  为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

  Language:Python65.7k2771.6k8.1k

• kaixindelele/ChatPaper

  Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

  Language:Python18.5k942181.9k

• ahmetbersoz/chatgpt-prompts-for-academic-writing

  This list of writing prompts covers a range of topics and tasks, including brainstorming research ideas, improving language and style, conducting literature reviews, and developing research plans.

  3.2k384292

• PacktPublishing/Causal-Inference-and-Discovery-in-Python

  Causal Inference and Discovery in Python by Packt Publishing

  Language:Jupyter Notebook7861711269

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim70222211100

• lh3/bioawk

  BWK awk modified for biological data

  Language:C5923635119

• Nextomics/NextDenovo

  Fast and accurate de novo assembler for long reads

  Language:C3691420953

• iqtree/iqtree2

  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

  Language:C++2461422557

• tangerzhang/ALLHiC

  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data

  Language:Perl174717739

• millanek/Dsuite

  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

  Language:C++16299425

• DessimozLab/read2tree

  a tool for inferring species tree from sequencing reads

  Language:Python144116318

• moiexpositoalonsolab/grenepipe

  A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

  Language:Python9345821

• sujaikumar/assemblage

  Tools for working with second gen assemblies, fasta sequences, etc

  Language:Perl9216336

• miguelperezenciso/DLpipeline

  Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

  Language:Logos616245

• ctlab/GADMA

  Genetic Algorithm for Demographic Model Analysis

  Language:Python4765014

• Jianwei-Zhang/DEGAP

  Dynamic Elongation of a Genome Assembly Path

  Language:Python15340

• WarrenLab/hic-scaffolding-nf

  Nextflow pipeline for scaffolding genome assemblies with Hi-C reads

  Language:Nextflow13374

• GenisGE/evalAdmix

  Language:C++12032

• Joseph7e/Nanopore-Workflow

  Working pipeline for nanopore + illumina data

  Language:Shell9205

• sjswuitchik/duck_comp_gen

  Comparative genomics of obligate brood parasite and closely related species in Anatidae

  Language:HTML8235

• liushoucheng/SPART

  a Semi-automated pipeline for assembling T2T genome

  Language:Python620

• mpicbg-csbd/napari-kics

  A plugin to estimate chromosome sizes from karyotype images.

  Language:Python61320

• stsmall/abc_scripts2

  Language:Python6200

• jrhomburger/LocalAncestryPipeline

  My pipeline for running shapeit, RFMix, and PCAmask. This includes local ancestry calls - please email me if you download it.

  Language:Python5700

• jordanbemmels/kiwi-holocene

  Language:R4102

• jthlab/momi3

  Language:Python4210

• jeppebayer/EcoGenetics

  Language:HTML310

• yexinhai/Anastatus_genome_project

  Codes for Anastatus genome paper

  Language:Shell3200

• tododge/christmas_island_reptiles

  Language:Shell210

• kaiyaprovost/whole_genome_pipeline

  Language:Shell1200