Pinned Repositories
beta-binomial-web-demo
A demo of bayesian statistics
BioSeq
Nim package for working with biological sequence data such as DNA, RNA, and amino acids.
CNN-Utils
Utility functions for doing convolutional neural network analysis
GPS-Utils
Command line tools for accessing and visualizing data from a Garmin GPS device
nim-bayes
Tutorial on Bayesian inference of a linear model in Nim
phy2nex
Convert phylip file to nexus with option to include partition file
PhylogeNi
A Nim library for phylogenetic trees
recipes
Kerry & Aura's recipes
subsample-py
Compute or approximate the most uniformly distributed subset of a given set of points
kerrycobb's Repositories
kerrycobb/BioSeq
Nim package for working with biological sequence data such as DNA, RNA, and amino acids.
kerrycobb/PhylogeNi
A Nim library for phylogenetic trees
kerrycobb/nim-bayes
Tutorial on Bayesian inference of a linear model in Nim
kerrycobb/GPS-Utils
Command line tools for accessing and visualizing data from a Garmin GPS device
kerrycobb/recipes
Kerry & Aura's recipes
kerrycobb/align-error-sp-tree-sim
Scripts and manuscript for species tree book chapter on bias and error
kerrycobb/CNN-Utils
Utility functions for doing convolutional neural network analysis
kerrycobb/3rad-demultiplex-nextflow-pipeline
Demultiplex 3RAD data.
kerrycobb/ancestry-block-sim
Tool to simulate recombination of different ancestries
kerrycobb/archiving-seq-data
kerrycobb/Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
kerrycobb/bgc_utils
Python module for parsing the output of the software tool bgc (bayesian genomic clines)
kerrycobb/birthday
kerrycobb/dissertation
kerrycobb/frog_calls
Auburn University herpetology lab study tool for frog calls. To use visit: https://tinyurl.com/aufrogs or https://kerrycobb.github.io/frog_calls/
kerrycobb/FrogCap-Sequence-Capture
Probe set files and pipeline for the analysis of data acquired from the Hutter et al. (2019) sequence capture probe set for all frogs
kerrycobb/getting-started
Getting started with Nim for Scientific Computing
kerrycobb/herp-lab-proj-sim
Script to simulate data for Auburn University herpetology class project
kerrycobb/lib-prep-tools
Some command line tools to aid in preparing genomic libraries.
kerrycobb/nim-nexus-lib
Half baked library for reading and writing Nexus files
kerrycobb/nimibook
A port of mdbook to nim(ib)
kerrycobb/packages
List of packages for Nimble
kerrycobb/plotting-tutorial
Introduction to popular visualization tools for data science
kerrycobb/qsub-wrapper
Qsub wrapper for use by Phyletica Lab on the Hopper Computer Cluster
kerrycobb/rad-pipeline
Scripts for processing RADseq data
kerrycobb/radseq-barcodes-file-gen
Easily generate barcodes files for 2RAD/3RAD data
kerrycobb/sra-nextflow-pipeline
Download , trim , quality check, and map SRA reads to a reference genome.
kerrycobb/sra-tools
Package for download SRA data and associated metadata
kerrycobb/theta-cnn
kerrycobb/toad-evolution
Scripts used for studies on phylogeography and hybridization of North American toads