/lib-prep-tools

Some command line tools to aid in preparing genomic libraries.

Primary LanguagePython

This repository contains some scripts that are helpful for preparing Illumina libraries.

lib-prep-tools

Instalation

pip install git+https://github.com/kerrycobb/lib-prep-tools

Commands

samplePrep

Calculate how much starting material and how much water/buffer are needed to achievve a desired nanomolar concentration and volume of DNA for sequencing.

Run samplePrep --help for guide to usage.

Illumina platforms typically require samples to be at 5 nanoMolar concentrations.

dilutionCalc

Calculate how much starting material and how much water/buffer are needed to achieve a desired concentration and volume of DNA.

Run dilutionCalc --help for guide to usage.

molToNg

Calculate the concentration of DNA needed to achieve a desired molarity.

Run molarityCalc --help for guide to usage.