Pinned Repositories
Awesome-Bioinformatics-Benchmarks
A curated list of bioinformatics bench-marking papers and resources.
ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
CorLevelPlot
Visualise correlation results and test significancies of these
E-MTAB-6141
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
PCAtools
PCAtools: everything Principal Components Analysis
RegParallel
Standard regression functions in R enabled for parallel processing over large data-frames.
Rtutorials
R training notes for absolute beginners
scDataviz
scDataviz: single cell dataviz and downstream analyses
TCGAbarcode
kevinblighe's Repositories
kevinblighe/EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
kevinblighe/PCAtools
PCAtools: everything Principal Components Analysis
kevinblighe/E-MTAB-6141
Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
kevinblighe/scDataviz
scDataviz: single cell dataviz and downstream analyses
kevinblighe/RegParallel
Standard regression functions in R enabled for parallel processing over large data-frames.
kevinblighe/ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
kevinblighe/CorLevelPlot
Visualise correlation results and test significancies of these
kevinblighe/Awesome-Bioinformatics-Benchmarks
A curated list of bioinformatics bench-marking papers and resources.
kevinblighe/Rtutorials
R training notes for absolute beginners
kevinblighe/TCGAbarcode
kevinblighe/AunerLab_CCLE
kevinblighe/clusGapKB
Parallelised Gap Statistic (Tibshirani et al., 2001) calculation and clustering
kevinblighe/BiostarsMisc
kevinblighe/RapidRNAseq
A wrapper for Kallisto
kevinblighe/awesome-expression-browser
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
kevinblighe/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
kevinblighe/biostar-engine
The Little Engine that Could:
kevinblighe/tcga-ee
TCGA Expression Explorer (shiny app)
kevinblighe/agilent
BED files and panel information for Agilent assays
kevinblighe/bioFreelancers
Freelance bioinformaticians directory
kevinblighe/biostar-recipes
Tools, Pipelines for the Biostar Engine
kevinblighe/CipherText
GUIs for encrypting/decrypting text using Caesar and Vigenère ciphers
kevinblighe/JavaWordProcessor
Multi-document text editor with basic functionality and drop-down menu system
kevinblighe/kmerGenerator
Generate all possible k-mers
kevinblighe/PythonScripts
kevinblighe/scDataviz_data
kevinblighe/SCEGallery
Pretty plotting for SCE objects.