kevinblighe/PCAtools

Issues

• partial display of labels seems not working in biplot function selectLab parameter

  #76 opened 4 months ago by persicomaria
  0

• FeatureRequest: continous color scale legend for `biplot`

  #72 opened a year ago by wbvguo
  0

• eigencoreplot error

  #73 opened a year ago by AnjaliS1
  1

• The package fails checks on Bioconductor

  #75 opened 7 months ago by trinetra75
  4

• Error with the pca function

  #70 opened a year ago by Pierre9344
  3

• PCA function error, hi can you fix this function by adding useNames=F to the colVars function from the matrixStats package.

  #71 opened a year ago by elifozcelik
  0

• Extend pca() arguments to allow specifying BPPARAM in the calls to BiocSingular

  #69 opened a year ago by trinetra75
  0

• Use on voom-limma normalized data ?

  #68 opened a year ago by Krithika-Bhuvan
  0

• Obtaining the eigenvalues

  #67 opened a year ago by luizalmeida93
  0

• problem creating pca object

  #66 opened a year ago by jawi005
  0

• biplot error message

  #65 opened a year ago by Rimagination
  0

• ggpairs plots legend for every subplot

  #56 opened 2 years ago by nikofleischer
  2

• Color of labels

  #63 opened 2 years ago by SebastianHesse
  0

• Warning: non-numeric variables will be coerced to numeric

  #62 opened 2 years ago by arunhpatil
  1

• Using stat_ellipse to indicate clustering results

  #60 opened 2 years ago by SebastianHesse
  5

• biplot error message

  #61 opened 2 years ago by yussufhajjaj
  1

• Not able to showLoadings on biplot

  #52 opened 2 years ago by cejdan
  3

• tSNE tools

  #53 opened 2 years ago by Shicheng-Guo
  2

• Percentage variation

  #58 opened 2 years ago by VictorGoitea
  1

• Biplot connectors not drawn

  #57 opened 2 years ago by Izar-de-villasante
  1

• eigencorplot throws an error when plotting only a single variable

  #55 opened 2 years ago by nikofleischer
  1

• Legend with Pairsplot

  #54 opened 2 years ago by hmraimeryoung-95
  1

• Any easy way to run PCAtools on Seurat Objects?

  #36 opened 3 years ago by mr-september
  2

• Changing size of shape legend icons / symbols

  #51 opened 3 years ago by milcs40
  1

• Support PCA methods for `base` based `pca`

  #50 opened 3 years ago by Nelson-Gon
  2

• PCAtools’ is not available (for R version 3.6.1)

  #49 opened 3 years ago by naz14
  7

• ellipse circle is in parts

  #48 opened 3 years ago by aaqib-ux
  2

• Use other metadata than "colby" for encircle

  #46 opened 3 years ago by SebastianHesse
  2

• can't hide ellipseline

  #47 opened 3 years ago by little2b
  9

• Bug in pca function when inputting metadata

  #45 opened 3 years ago by GiantSpaceRobot
  0

• exporting results for interactive visualization?

  #40 opened 4 years ago by guidohooiveld
  3

• Setting scale=TRUE produced error from svd()

  #39 opened 4 years ago by chainorato
  3

• Ellipse function returning weird results

  #37 opened 4 years ago by luizalmeida93
  6

• Minor typo in README

  #38 opened 4 years ago by RamRS
  1

• Adding a black border to plotted colored points

  #35 opened 4 years ago by parcbioinfo
  2

• Biplot variance really high when center=FALSE for pca

  #31 opened 4 years ago by rpolicastro
  0

• biplot issue

  #33 opened 4 years ago by luis-martinez-robles
  1

• difference between PCA with and witout metadata

  #30 opened 4 years ago by Manonanthini
  1

• biplot showLoadings argument not available

  #29 opened 4 years ago by FelixErnst
  2

• An eigencor plot?

  #28 opened 4 years ago by hamidghaedi
  1

• Error with ellipse feature

  #27 opened 4 years ago by amarinderthind
  1

• Cant draw elipses ("encircle" option missing in biplot)

  #26 opened 4 years ago by SebastianHesse
  3

• option to plot confidence cicrles

  #19 opened 5 years ago by guidohooiveld
  14

• Analysis of RNAseq data with cases and conversion geneList creation with clusterProfiler

  #24 opened 5 years ago by Jokendo-collab
  8

• biplot loading arrows error

  #25 opened 5 years ago by TonyMannion
  2

• predict method

  #16 opened 5 years ago by pwwang
  6

• reading object of class phyl.pca ?

  #23 opened 5 years ago by Jigyasa3
  4

• Output loadings to data-frame

  #21 opened 5 years ago by kevinblighe
  0

• Make biplot a strict biplot

  #20 opened 5 years ago by kevinblighe
  0

• How to manually set order legend?

  #17 opened 5 years ago by guidohooiveld
  2