Pinned Repositories
BHIT
Bayesian High-order Interaction Toolkit (BHIT) used a novel Bayesian computational method with a Markov Chain Monte Carlo (MCMC) search for detecting epistatic interactions among single nucleotide polymorphisms (SNPs).
bioinformatics-pipeline-tutorial
A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
caf-subtype-analysis
CAF_Fusion_Neoantigens
git-for-science
A quick introduction to version control with Git and GitHub
hlamajority
kevinpryan
Config files for my GitHub profile.
misc
Some miscellaneous scripts
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
Project
Master's project - identification of trans-eQTL clusters resulting from changes in transcription factor binding site preference.
kevinpryan's Repositories
kevinpryan/BHIT
Bayesian High-order Interaction Toolkit (BHIT) used a novel Bayesian computational method with a Markov Chain Monte Carlo (MCMC) search for detecting epistatic interactions among single nucleotide polymorphisms (SNPs).
kevinpryan/bioinformatics-pipeline-tutorial
A tutorial on how to create bioinformatics pipelines as bash scripts, Makefiles and using tools like Nextflow.
kevinpryan/caf-subtype-analysis
kevinpryan/CAF_Fusion_Neoantigens
kevinpryan/git-for-science
A quick introduction to version control with Git and GitHub
kevinpryan/hlamajority
kevinpryan/kevinpryan
Config files for my GitHub profile.
kevinpryan/misc
Some miscellaneous scripts
kevinpryan/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
kevinpryan/NeoFuse
NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
kevinpryan/Project
Master's project - identification of trans-eQTL clusters resulting from changes in transcription factor binding site preference.
kevinpryan/NeoSplice
kevinpryan/nextNEOpi
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction
kevinpryan/nf-co.re
Code and files for the main nf-core website.
kevinpryan/pages_test
kevinpryan/rnafusion
RNA-seq analysis pipeline for detection gene-fusions
kevinpryan/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
kevinpryan/rtp_workshop
foobar
kevinpryan/thesis
Assignment 6 for MA5114
kevinpryan/thesis-test
kevinpryan/thesis_ma5111